Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq9 93.3 4e-14 >seq6 Length=291449 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 35500 CTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTT 35559 |||| || | || || | ||||||||| ||||||||||| ||| ||| || || || || Sbjct 274555 CTCTATAATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATT 274496 Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619 ||||| | | |||| |||| |||| |||||| || ||||| || | | ||| || Sbjct 274495 ATAATCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTG 274436 Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679 || | ||||| | || || || ||||| |||| | || | | || || Sbjct 274435 ATCTGGAGGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGA 274376 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 | ||| || |||| || || ||||| || ||||| |||||||||||||| ||||| || Sbjct 274375 AGGTTCAACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCATACT 274316 >seq9 Length=249065 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| ||| |||||||| ||||| || | ||| || || | || Sbjct 144164 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATC 144105 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| ||||| ||||| ||||| || || ||||| | |||| || |||||||| Sbjct 144104 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 144045 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| ||| | || | | || || | ||| || || | || || || Sbjct 144044 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 143985 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || || | ||| ||||||||||| |||||| Sbjct 143984 CTTCCCAGTGAGAGTCTTCACAAATATTTGCATT 143951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| ||| |||||||| || || || | ||| || || | || Sbjct 144620 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144561 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| ||||| ||||| ||||| || || ||||| | |||| | |||||||| Sbjct 144560 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144501 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| ||| | | || | | || || | ||| || || | || || || Sbjct 144500 TTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144441 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||| ||||||||||||||||| Sbjct 144440 CTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| ||| |||||||| || || || | ||| || || | || Sbjct 144392 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144333 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| ||||| ||||| ||||| || || ||||| | |||| | |||||||| Sbjct 144332 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144273 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| ||| | || | | || || | ||| || || | || || || Sbjct 144272 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144213 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | ||| ||||||||||| ||||| Sbjct 144212 CTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791160079640