Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq36 538 5e-148 >seq36 Length=158315 Score = 538 bits (596), Expect = 5e-148 Identities = 721/997 (72%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 ||||| | |||||||| ||| | || || | |||||||| ||| | |||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGT 174577 || || ||||||| |||||||| || | || || | ||| || || || | || | Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTACA-TCTGTATTTATAATTGGATTTAT 27656 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | |||||| ||||| || || ||||| || | |||||||| | || ||| | | || Sbjct 27655 AGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATA 27596 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 |||||| || || || ||||||| |||| |||| || || ||||| || |||| || Sbjct 27595 TGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTT 27536 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 ||| || || ||||||||||| | | || |||||||| || || || ||||||| | Sbjct 27535 CTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGA 27476 Query 174758 ACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 | || | || || |||||| ||||||| || | || |||||||||||||| |||||| | Sbjct 27475 ATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATT 27416 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 |||||| | || ||| | |||||||| ||||| | ||| || || ||||| || Sbjct 27415 AAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGC 27356 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| |||| ||||| | |||||||| | || |||||| || ||||| | ||||| Sbjct 27355 AGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCC 27296 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||| ||||| || || || | ||||| || |||||||| |||||||| || || Sbjct 27295 ATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTT 27236 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 ||||| || || || ||| |||| || || ||||| || || |||||||| || || Sbjct 27235 AATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGC 27176 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCAC--TTG-TCCGTGAGACAACTGAAACTGAGTC 175114 ||||| || || ||||| || |||| ||| | ||||| ||||| || | |||||| Sbjct 27175 AATGCACGGCTCTCTTGTAAC---TTCAAGTTTGATACGTGAAACAACAGAGAATGAGTC 27119 Query 175115 ACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCA 175174 ||| ||||||| || || ||||||||| | || || ||||||||||| || || || Sbjct 27118 TGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCA 27059 Query 175175 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCA 175234 ||| || || || | || || |||||||| || || || || ||||||||| | || Sbjct 27058 TGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACA 26999 Query 175235 CTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCAC 175294 ||||||||||| ||||||||| || |||| ||| |||| | | ||| | ||| Sbjct 26998 TTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCAC 26939 Query 175295 AATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAG 175354 ||||||||| ||| | ||||| || || || || || |||||| | || ||||| || Sbjct 26938 AATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAG 26879 Query 175355 AGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCA 175414 |||| | || || ||||| ||| || | || | || | | || || ||||||||||| Sbjct 26878 AGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCA 26819 Query 175415 TGAGAGAAATGCACACAACTTCCCACTAGATTTGGCA 175451 ||| | |||||||| ||||| || |||||||| ||| Sbjct 26818 TGAACGTAATGCACATAACTTTCCTCTAGATTTAGCA 26782 Score = 452 bits (500), Expect = 6e-122 Identities = 690/974 (71%), Gaps = 12/974 (1%) Strand=Plus/Plus Query 175881 GATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCC 175940 ||| | ||| |||||||||| ||||| || || |||||| |||| | | ||||| || Sbjct 39807 GATCGATTTGTCTTTATTGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCT 39866 Query 175941 ATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCT 176000 | || | |||| |||| || ||||||||||| || |||||| || |||||| | ||| Sbjct 39867 CTAGGTGCCTGGTTTACAGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCT 39926 Query 176001 TCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCT 176060 ||||| ||| | || || ||| ||| | || || || || || | |||||| || | Sbjct 39927 TCTTCTTATTTAGAAGGATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGT 39986 Query 176061 ATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTG 176119 ||||| || || || || | || ||||| || ||| |||| || || || | || Sbjct 39987 ATGGGACACTC-ATTATTATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATG 40045 Query 176120 GCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGG 176179 | ||| ||||||| |||||| | ||| |||| | || ||||| || || |||| || Sbjct 40046 GTGTCAAATTGGAGGTCTTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGG 40105 Query 176180 ATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTA 176238 || || || ||||| |||||| | || ||| | | || || | || ||||| || | Sbjct 40106 -TTTTTGTTTGCGTCAATTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAA 40164 Query 176239 TTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTC 176298 | || || || || || || || ||||| || |||||| | || ||||| || | Sbjct 40165 TAGCTTTTTCAGGACCAATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGC 40224 Query 176299 AATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGT 176358 || || ||||| ||||| || ||||| || ||||| |||||| |||| | || | Sbjct 40225 AAGCTAGTTGGTTTTTTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTAT 40284 Query 176359 TTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTA 176418 || | || |||||||| || ||||| | || || || ||||||||||| |||||||| | Sbjct 40285 TTTTACAAGGTTTCCATAATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAA 40344 Query 176419 TACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATG 176478 |||| || |||||| |||| | ||| || ||||| | ||||| || ||||| ||| | Sbjct 40345 TACTCGGAGGAGCATTACTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCG 40404 Query 176479 AAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCT 176538 ||||||| ||| || || |||| || || | || || || || || | Sbjct 40405 AAGATGGCGAAGCTGCTAATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTT 40464 Query 176539 ATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATA 176598 |||| |||||||| || || || || ||||| ||||| || || ||||| ||| ||| | Sbjct 40465 ATTCAATGGTTACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACA 40524 Query 176599 AGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG-- 176656 | | ||||| || || |||||| | ||||| || || | || | ||| |||| Sbjct 40525 AAAGATGGCTACATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGG---ACAAGCT 40581 Query 176657 -TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGA 176715 |||||| ||||| || ||||| | ||| | ||||| ||||||||||| ||||| | Sbjct 40582 CTATTGGTATCATAGGACTTGCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGA-A 40640 Query 176716 TTA-GAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAAC 176774 ||| | || ||||| || || || ||||| ||||| || || || || | ||||| || Sbjct 40641 TTACGTGCCGCAGAGGACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAAT 40700 Query 176775 GAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCA 176834 ||||| ||||||||||||||||| | |||||||||||||| |||||||||||| Sbjct 40701 GAAGGTATAAGAGCATGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCA 40760 Query 176835 GAAGAAGTTCTACC 176848 || || ||| |||| Sbjct 40761 GAGGAGGTTTTACC 40774 Score = 100 bits (110), Expect = 4e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 171138 GATCAATACATCCTAGATGCCGCAGAGGAAGCGGGTGTATATCTCCCATATTCATGTAGA 171197 |||||||| || ||||||| || || ||| || || |||| || ||||| |||||| Sbjct 69674 GATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGTAGA 69733 Query 171198 GCTGGTGCTTGTTCATCCTGTGCAGGTAAGATTGTATCTGGAAAGGTGAATCAAGAAGAC 171257 || || || ||||| | ||||||||||| | || ||| | || ||||| || Sbjct 69734 GCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAGTAGATCAATCTGAT 69793 Query 171258 CAGTCATTCTTAGATGATGATCAGATCGAAGCAGGTTTCGCACTCTTATGTGTAGCTTAT 171317 |||||||| |||||||||||||| | ||||||| || | || |||||| || ||| Sbjct 69794 CAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACATGTGTTGCATAT 69853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729925649256040