Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq36 491 5e-134 >seq36 Length=158315 Score = 491 bits (544), Expect = 5e-134 Identities = 727/1023 (71%), Gaps = 8/1023 (1%) Strand=Plus/Plus Query 179214 AGGGGGTGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGT 179273 || ||||||||||| | | || || ||| | ||||| ||||| ||||||||| | || Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 179274 TGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGG 179333 ||||| || | |||||| |||| | | ||||| || | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 179334 ACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCT 179393 ||| |||||||||| |||||| || || ||| | ||| ||| ||| | || || | Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 179394 AACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA 179453 || ||| | || || || || || | ||||| || |||||| || || || || | Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTC-ATTATTATT 40006 Query 179454 CTT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTG 179512 || ||||| || || |||| || |||| | ||||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 179513 GAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTT-AGGCAATTTG 179571 || ||| ||| | || ||||| || || | || ||||| || || | ||||||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTTG 40125 Query 179572 AACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTG 179631 || | || | | | || || || || |||||||| || |||||||| || || |||| Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 179632 CTGTATTCG--TCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGC 179689 | || || | ||||| ||| || || ||||| | || || | ||||||||| || Sbjct 40186 CAGTTTTTGTTTCAGTATTT--CTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGC 40243 Query 179690 GCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAA 179749 || ||||| || || || ||||| | || | | || | || |||||||| || Sbjct 40244 TCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAA 40303 Query 179750 CTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCT 179809 ||||| | || || || ||||||||||| |||||||| ||||| ||||||||| | || Sbjct 40304 TTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACT 40363 Query 179810 CAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAA 179869 ||||||| ||||||| ||||||||||||||||| | |||||||| ||| || || Sbjct 40364 TTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAA 40423 Query 179870 TACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 179929 ||| || | ||| ||| | ||||| ||| || |||||||| ||||| || || || Sbjct 40424 TACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAA 40483 Query 179930 CCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTT 179989 || || ||||| || || || ||| |||||||||||||||| | ||||| |||||||| Sbjct 40484 TCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTT 40543 Query 179990 CATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGC 180049 ||| | |||||||| |||| || |||||||| ||||||||| || || || ||||| Sbjct 40544 TATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGC 40603 Query 180050 TCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGA 180109 | || | ||||| || ||||| || ||| || | | || ||||| || || || Sbjct 40604 ATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGA 40663 Query 180110 GTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGC 180169 |||||||| || || || || || | ||||| |||||||| || | |||||| |||| Sbjct 40664 ATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGC 40723 Query 180170 ACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAA 180229 | || |||||||||||||| || ||||||||||| || ||| | ||| | || || Sbjct 40724 AACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 40783 Query 180230 TGC 180232 ||| Sbjct 40784 TGC 40786 Score = 459 bits (508), Expect = 3e-124 Identities = 678/958 (71%), Gaps = 2/958 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 || || ||||| | |||||||| || ||| | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 |||||| || || | | || | |||||||| || || || || ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || | || ||| | | ||||| || || || || ||||||| |||| || | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 || || ||||| || | || |||||||| || |||||||| ||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 ||| ||||| || ||||||| || | |||| || |||||| | ||||| || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 ||| ||||||||||| |||||| | || ||| | || ||||| || ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||| | ||| ||||| || || ||||| | || ||||| | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 |||| ||||| || | |||||| | || || |||||||| || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||||||| ||||| || ||| | ||||| || || || ||| ||||||| || ||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 ||| || |||||| | || |||||||||||||| ||| | || || || | | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 |||||| || || | || || ||| |||||||||| || || |||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || ||||||||||| || ||||| || || || | || || ||||||||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 || || ||||| ||| | || |||||| | || |||||| ||||| | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 ||| | | || | ||||| |||||||||||| | |||||||| || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | || |||||| | || | || || ||||| || | | || ||||| Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCA 178832 | | || || ||||| ||||| || || || || || ||||| || || ||| | ||| Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTTAGCA 26782 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||||| ||||| | || || ||||||||| ||| ||||| | || |||||| Sbjct 69671 GATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGT 69730 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAG-AGAGTGGTTCTGTTGATCAGAG 176455 | || || || ||||| ||||||| || ||||| ||| || || ||||| Sbjct 69731 AGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAA-GGACAAGTAGATCAATC 69789 Query 176456 TGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATC 176515 ||||||||| || || ||||||||||| | || | || ||| | || || || || | Sbjct 69790 TGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACATGTGTTGC 69849 Query 176516 TTATCCTACTAGTGAT 176531 ||||||||| || || Sbjct 69850 ATATCCTACTTGTAAT 69865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606006319973040