Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq36 520 1e-142 >seq36 Length=158315 Score = 520 bits (576), Expect = 1e-142 Identities = 692/954 (73%), Gaps = 8/954 (1%) Strand=Plus/Minus Query 178888 AATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACT 178947 |||||| | || | |||||||| || || | ||||| ||||| || || | || || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 178948 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGA 179006 |||||| || || ||| || |||| || || || || ||||| ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 179007 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAG 179066 ||| || | || ||| | | |||||||| || || || |||||||| |||| || | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 179067 TTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTG 179126 || || ||||| || |||| ||||| || || |||||||||||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 179127 GCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGC 179186 ||| ||||| || ||||||| || | |||| || |||||| |||| || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 179187 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGT 179246 |||||||||||||| |||||| | || ||||| || |||||||| ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 179247 TGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 179306 || | ||| || || || ||||| || | || ||||| | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 179307 AGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 179366 |||| ||| || |||| |||||| | ||||| |||||||||||||| | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 179367 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 179426 |||||||| ||||| || || | ||||| ||||| |||||| | ||||||||||| || Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 179427 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT-C 179485 ||| || || || | || ||| |||||||| ||| || ||||| | ||| | | Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAA-GTTTGATAC 27141 Query 179486 GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGA 179545 |||||||||| |||| ||||| ||| |||||||||| || || |||||| | || | Sbjct 27140 GTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAA 27081 Query 179546 CCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 179605 | ||||||||||| || || ||||| || || || | || || |||||||||||| || Sbjct 27080 CTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCT 27021 Query 179606 TTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGT 179665 |||| || |||||||| || || |||||| | ||| ||||| || || | || ||| Sbjct 27020 TTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGC 26961 Query 179666 TCACTGCTCTTGGCGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCA 179723 |||| |||| || ||| || ||||| || ||| | || || || || || || || Sbjct 26960 TCAC--ATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCA 26903 Query 179724 GTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGC 179783 || | |||| ||||||| | || |||| || ||||| || | || || ||||| Sbjct 26902 ATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGC 26843 Query 179784 AGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 179837 | ||| || || ||||| |||||||| ||||| ||||| ||||| || || || Sbjct 26842 AAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 484 bits (536), Expect = 8e-132 Identities = 723/1021 (71%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 180012 AGGGGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGC 180071 || ||||||||||| | | || || ||||| ||||| || || ||||| ||| | || Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 180072 TGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGC 180131 ||||| || | |||||| |||| | | ||||| || | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 180132 ACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCT 180191 ||| ||||||| || |||||| || || ||| | |||||||| ||| | ||||| | Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 180192 AACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTA 180251 || ||| | || || || || || | ||||| | |||||| || || || || | Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTC-ATTATTATT 40006 Query 180252 CTT-TGGGGTCCTGAGTCTC-AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCT 180309 || ||||| || || ||| ||| || ||| | | | ||||| ||| |||| || || | Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTA-GATGGTGTCAAATTGGAGGTCTTT 40065 Query 180310 GGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTG 180369 ||| ||| ||| | || ||||| || ||| | || || ||| | || || |||| Sbjct 40066 GGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAATTTG 40125 Query 180370 AACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCG 180429 || | || | | | || || | || |||||||| || || || || || || || | Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 180430 CTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTC 180489 | || ||||| |||||||| || || ||||| || || | |||||||| ||||||| Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 180490 CCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACT 180549 | |||||| || ||||| |||||| |||| | | ||| | || |||||||| || | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 180550 GGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTAT 180609 |||| | || || || ||||||||||| |||||||| ||||| || |||||||| || | Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 180610 CAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACA 180669 || || ||||| | ||||| ||||| ||| | | |||||||| ||| || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 180670 CCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACC 180729 | || | ||| ||| |||| ||| ||||||||||| || ||||| || || || | Sbjct 40426 CTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATC 40485 Query 180730 GCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCA 180789 | || ||||| || || || ||| |||||||||||||||| | ||||| |||||||| | Sbjct 40486 GTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTA 40545 Query 180790 TGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTC 180849 || | |||||||| |||| || |||||||| ||||||||| || || || ||||| Sbjct 40546 TGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCAT 40605 Query 180850 TCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGT 180909 | || | ||||| || ||||| || |||||| | | || ||||| || || || | Sbjct 40606 TAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAAT 40665 Query 180910 TCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCAC 180969 | ||||| || || || || || | || | |||||||| || | |||||| ||||| Sbjct 40666 TTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAA 40725 Query 180970 CTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACG 181029 | ||||||||||| ||||| || | ||||| || || ||| ||||| | || || | Sbjct 40726 CACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATG 40785 Query 181030 C 181030 | Sbjct 40786 C 40786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610326296591040