Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 248 1e-60 seq62 242 5e-59 seq26 212 9e-50 >seq19 Length=190679 Score = 248 bits (274), Expect = 1e-60 Identities = 501/735 (68%), Gaps = 10/735 (1%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| |||||||| | | ||| || |||| ||| | || |||||| |||| |||| || Sbjct 26366 CTCCTTTTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACC 26307 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGTTTCAT 69605 ||| |||||| ||||| | || || || || |||||||| |||| |||||| Sbjct 26306 TGGAGCTTCATTGGGACAAAATAA--ACTCCATTTC-TCATCCTTTTCTACTCTTTTCAT 26250 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 ||||| |||||||| ||| | | | ||| | ||||| | || ||||||||| ||||| Sbjct 26249 AAATAAATCGGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCC 26190 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| ||| | | ||| | ||| || | |||||| | |||||| || || | ||| || Sbjct 26189 ATGATTCTTTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAAT 26130 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | |||| || ||| |||||| ||||| | ||||| ||||| | |||| | Sbjct 26129 AGCAAAAGCTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAA 26070 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 |||| ||||| |||| ||| |||||||| | ||||| || || ||||||| | Sbjct 26069 TACTCGAAGCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTT 26010 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 |||| || |||| | || | | || || || || || ||||||| || | || Sbjct 26009 GGTTGCACGTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGC 25950 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAA 69964 ||| | ||| || || ||||| || || || ||| || || |||| ||||| || | Sbjct 25949 ACATCTTTTTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAA-TAGGA 25891 Query 69965 AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024 |||| || | ||| | | ||| |||||||| ||||| ||||| || || |||| Sbjct 25890 AACAAGAGGATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAG 25831 Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGT-TTCAATAGCTGATTCTATATCCCACTGA 70083 | || ||||| ||| | || || || | ||||| ||| ||| | || || Sbjct 25830 TAAAGTATTTTCGAGACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG 25772 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 ||||| || | || || | |||||||||||| || |||||||||| | ||| || Sbjct 25771 TGAATACCAACAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCC 25712 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 | || | || || ||| | |||||| || ||||| || | || ||||||||| Sbjct 25711 ACACGTAATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCT 25652 Query 70204 CTTTCGTAAATAATA 70218 | || ||||||||| Sbjct 25651 CGATCATAAATAATA 25637 >seq62 Length=89227 Score = 242 bits (268), Expect = 5e-59 Identities = 411/587 (70%), Gaps = 10/587 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || || |||||||| | ||| ||||||| || || || || || || || || Sbjct 48131 GCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAG 48190 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| | || || || || | ||||||||||| | |||||| ||||||||||| Sbjct 48191 ACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAA 48250 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT--TGTATCATTATGT 39793 || ||||||||||||||||| ||||| | | ||| | |||| || | ||| || Sbjct 48251 TATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGGAACATC--GT 48308 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| || | |||||| |||||||| || ||||||| | |||| || || | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || | | | | ||||| | ||||| || ||| ||||| || | | | |||||| Sbjct 48369 AACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| | ||||| || ||||||||||| || || ||||| | ||||| | | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || | || ||| | | ||||| ||||||||||| || |||||| ||| ||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATT--TTTCATCGGGTGTCAATTTATTCCAGT 40091 ||||||||||| ||||| ||||| | || | | || | || | |||||| | Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGAT-GAATG-GAGAGAATTCCAAT 48606 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA-AAACGACGCCTCTGCCTTT 40150 | | ||||| |||| || ||||||||| ||||||| |||| | || || || | Sbjct 48607 CTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTA-GCTTCCGCACGT 48665 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || || | | |||||| | | |||| ||| ||||| | |||||| Sbjct 48666 TTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 >seq26 Length=183063 Score = 212 bits (234), Expect = 9e-50 Identities = 365/530 (69%), Gaps = 0/530 (0%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||| || || ||||||||||| | || ||||| | ||| | || ||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 | ||| ||||| || || | |||||| | ||||||||||| | |||||| |||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG 39792 || || || ||||| || |||||||| || | | ||| | || | | || Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTG 77272 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | ||||| | ||| || |||| | |||||| || ||| || || | Sbjct 77273 GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTC 77332 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| | | | ||||| | | |||| || ||| ||||| || | ||| ||| | Sbjct 77333 AAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGT 77392 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 ||| ||||| || ||||| || || || |||||||| |||||||||| |||||| | ||| Sbjct 77393 TTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAAT 77452 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || || || |||||||||||| || | || || || ||||| || || || Sbjct 77453 CTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGC 77512 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 ||| || |||||||| || ||| |||| ||||| | ||||||| ||||| || Sbjct 77513 AAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATC 77572 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | | || | |||| ||||| ||||||||| |||||||| || |||| Sbjct 77573 TTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| || || || ||||| ||||| || || || |||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | | | | ||| | | |||| || | | | Sbjct 76817 TCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | ||| |||||||| || || || ||||||| |||| |||||||||||| | | Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAAT 76936 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTC 39540 || |||| | ||| | |||||||||||| Sbjct 76937 GCTACCGGTAATGACTCACAAATAAACTCTTTTTC 76971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905082106120