Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq62 244 8e-60 seq26 192 5e-44 seq52 156 3e-33 >seq62 Length=89227 Score = 244 bits (270), Expect = 8e-60 Identities = 373/526 (71%), Gaps = 14/526 (3%) Strand=Plus/Minus Query 43763 TTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAA 43822 || ||||||| |||||||| || | | |||| ||| | |||||| | | | | Sbjct 48649 TTCTGGACAGTTGAAGAAGTCGACCTATCCCAAGATTTACGAGATTGGAATTCTCTCCAT 48590 Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 || ||| |||| |||||||| |||||||| |||||||| || || || || Sbjct 48589 TCATCAGAGCAACACTTTATATCCCATGTTTTGGCATTTTTTGCAGCTTCTGATGGCATC 48530 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 || |||||||| |||| ||| ||| ||||||||| |||| ||||| || ||| Sbjct 48529 GTGAATGAAAACTTGGCAGCTCGTTTTAGTACTGAAGTTCAAGTACCCGAAGCGCGTTGT 48470 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| ||||| || || || |||||| | ||||||||||||||| | | || || Sbjct 48469 TTCTATGGTTTTCAGATGGCTATGGAAAATGTACATTCGGAAATGTACGCTTTACTTATC 48410 Query 44003 GATACGTACATCAAAGAT-GGGCACGAGAAGCATCGATTGTTTAATGCGATAG-AAACAG 44060 ||||| || || |||| |||| || |||| ||| ||||| | || || | ||| Sbjct 48409 GATACTTATATTCGAGATATGGCA-GAAAAGCGTCGTTTGTTCTACGCCATCGAAAATCT 48351 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC-- 44118 ||| || | | ||| | ||||| || ||| | | ||||||||| ||| | | Sbjct 48350 TACTTGTG-TGAAAAAGAAAGCGGATTGGTCTTTAAAATGGATA-----CGATGTTCCAG 48297 Query 44119 ---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||||| || || | || || ||||||| || ||||| || |||||||| || || Sbjct 48296 CAGTTTTGCTGAGCGTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTTTTCTGGTTC 48237 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||| |||||||||||||||||||||| || ||||||||||| | || || || || Sbjct 48236 TTTTTGTTCCATATTTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTACTTTCTCCAA 48177 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||||| ||| || ||||||||||| ||||| || ||||||||| Sbjct 48176 TGAGTTGATATCACGAGATGAAGGCTTGCATTGTGAATTTGCTTGC 48131 >seq26 Length=183063 Score = 192 bits (212), Expect = 5e-44 Identities = 360/529 (68%), Gaps = 0/529 (0%) Strand=Plus/Minus Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG 43814 |||| || |||||||| || |||||| | ||||| | | ||||| | | |||||| Sbjct 77622 AGGCTTCTTTTTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGA 77563 Query 43815 CATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 ||| || || | || ||||| || ||| || ||||| || ||||| | || Sbjct 77562 AATTGAATGCAGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCG 77503 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 |||| || || || || | | | ||| | || || || | ||||||| Sbjct 77502 ACGGAATTGTTTTGGAGAACCTTGCAGAAAGATTTTGTCGTGATGTCCAGATTCCAGAAG 77443 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||||||||||||||| |||||||| || || ||||||||||||||||||| || || Sbjct 77442 CACGATGTTTTTATGGATTTCAAATAGCAATGGAAAATATTCATTCGGAAACTTATTCTC 77383 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 |||| || ||||| || || ||||| || || ||| ||| || ||| | || || | Sbjct 77382 TTCTTATCGATACTTATATTCGAGATGCTCAAGAAAAGGCTCGTTTATTTGAAGCAATGG 77323 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 || | ||| ||| | | || || | ||||| | | |||||| | || || Sbjct 77322 AACGTATTCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGGATCCAATCCTCTG 77263 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 ||||||| || || | || || ||||| | ||| || || || || ||||| || | Sbjct 77262 CCTCTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTT 77203 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||| ||||||||||||| || || |||| | ||||| || ||||| || || | Sbjct 77202 CTTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTA 77143 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||||| | || ||||||||||| || ||||| || ||||| || || Sbjct 77142 ATGAGCTTATTTCACGTGATGAAGGTTTGCATTGTGACTTTGCATGTTT 77094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 44382 CATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACA 44441 ||||||| ||| || |||||||||||| | |||||| || |||||||| | Sbjct 76949 CATTACCGGTAGCATTGATAGGAATGAATAGTGATATGATGAGTCAGTATATTGAGTTTG 76890 Query 44442 TTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCG 44500 |||| |||||||| | | | |||| | || ||| | | | | | | ||| ||| Sbjct 76889 TTGCGGATCGTTTGTTGGTTGCTTTGGGATATGAGAAATATTTCCAGTCT-CGAAATCCG 76831 Query 44501 TTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560 ||||||| |||||| ||||| |||||||| || || ||||||||||| || || || Sbjct 76830 TTTGATTGGATGGAACTCATTTCTTTGGAAGGAAAGACCAACTTTTTTGAGAAGCGAGTG 76771 Query 44561 GGAGAATATCA 44571 ||||||||||| Sbjct 76770 GGAGAATATCA 76760 >seq52 Length=109007 Score = 156 bits (172), Expect = 3e-33 Identities = 351/525 (67%), Gaps = 22/525 (4%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || ||||||||| |||||||||||| || || || || | ||||||| || ||||| Sbjct 101680 ATAGGAGGATTGGATAAAGAGTTTTCGGATATTTTCCGACGTGCATTTGCTTCTCGTGTC 101739 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || || || ||||| | ||||| | | ||||| ||| | ||||| ||| Sbjct 101740 TTTCCTCCATCCGTTATTAAGAAGTTGGGTATTCAGCATGTGAAAGGAATGTTGCTATAT 101799 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACA 19419 || || || || ||||| || || ||||| | || || | ||| || | | Sbjct 101800 GGTCCTCCTGGAACGGGAAAGACTTTGATTGCCCGGCAAATTGGCAAAATGTTGAATGGA 101859 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 || || |||||| | ||||||||||| ||||| || || |||||||| || || ||| Sbjct 101860 AAGGAA---CCCAAAGTAGTAAATGGTCCAGAAATATTGAACAAATATGTGGGACAGTCG 101916 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACA-----AAAACGTTTAG 19534 |||||||| | ||| | | || || ||||||| ||| | ||| | | Sbjct 101917 GAAGAAAACATTCGAAATCTTTTCAAGGAAGCTGAAGCTGAATATCGTGAAAGATTGGAT 101976 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | | || || |||| ||||| ||| | || ||| | || || || |||||||| Sbjct 101977 GACTCAGAA-----CTGCATATTATTATATTTGACGAAATAGATGCCATATGTAAGCATC 102031 Query 19595 G-----AGGTTCTGG-TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 | | || | || || || ||||| ||||| || || |||||||| | || || | Sbjct 102032 GTGGGAATGTACGGGATGGAACAGGAGTTCATGATACAGTAGTCAATCAGTTGCTATCTA 102091 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 || |||| || || || ||| || ||||| | |||||||| ||||||||| || | Sbjct 102092 AAATAGATGGAGTGAATGCACTAAACAATATACTCGTTATTGGAATGACTAATCGAAAAG 102151 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAA 19753 | | || || || |||||| |||| || |||| ||| ||| Sbjct 102152 ATATGATTGATGAGGCGTTATTAAGACCTGGAAGGTTAGAAGTAA 102196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453902550165