Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq26 129 7e-25 seq6 113 6e-20 seq36 104 3e-17 seq8 100 4e-16 seq63 93.3 5e-14 >seq26 Length=183063 Score = 129 bits (142), Expect = 7e-25 Identities = 334/502 (67%), Gaps = 9/502 (2%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||| ||||| || |||||||| ||||| |||||| | |||||||| || || | ||| Sbjct 77117 ACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTCAATCCTGGCATAAGTCCTCTCTT 77176 Query 122736 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 ||||||||| | || | || || || || || || || || ||||| ||| ||||| Sbjct 77177 TTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAAAATATTCCCTCTACAGCAGCAAA 77236 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAACCATTTCATTGCCCATT 122854 || | | || || || || ||| ||| ||| ||| ||| | | ||||| | Sbjct 77237 TGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGGATC----CATCTTAAAGCCCACT 77292 Query 122855 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 122914 ||||| ||||||||||| || | | || || ||||||||||| | |||||| Sbjct 77293 GAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCAAATAAACGAGCCTTTTCTT 77352 Query 122915 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 122974 |||| ||| || | || || | ||||| ||||| ||||| |||| Sbjct 77353 GAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTTTCCGAATGAATATTTTCCA 77412 Query 122975 TATGGCA-TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAA 123033 | || | |||| || | || || | || ||||| ||||| || ||| | ||||| Sbjct 77413 T-TGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATCTGGACATCA-CGACAAAA 77470 Query 123034 TTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTA 123092 | || | | ||||| ||||||||||| ||||| |||||||| |||| | || Sbjct 77471 TCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCAAAGAAAGCCAATACGTG 77530 Query 123093 CTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAA 123152 ||||| | |||| | |||||| ||||||| || || | || | || || Sbjct 77531 AGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCTTCCAAGTCACTCGATAA 77590 Query 123153 ATCAACTTCTTCCGCAGTCCAA 123174 ||| | |||||| ||||||||| Sbjct 77591 ATCTATTTCTTCAGCAGTCCAA 77612 >seq6 Length=291449 Score = 113 bits (124), Expect = 6e-20 Identities = 296/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTG--TCAAAGCCATCCATCTCGG 11555 |||||||| || |||||||| | || ||| | | ||| || || || ||||| || | Sbjct 227003 CGATTAGTTGCTGCAATAACAATGATACCATTGT--TTGCTTCGAAACCGTCCATTTCTG 227060 Query 11556 TGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGC 11615 | || ||||| || | ||||||||||| ||||||||| | | | ||| || | | Sbjct 227061 TAAGCAATTGGTTGAGAGTTTGTTCTCTTTCATCATTTCCGCCCGCAATACCGGCTCCTC 227120 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 |||| | || || ||||| || |||||||| || | |||||| || ||| | || Sbjct 227121 TTTGCCTACCTACTGCATCTATTTCATCAATAAAAATAATACAAGGAGCATTCTTTTTGG 227180 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | |||| | ||| ||||| | | || || ||||||||||||||||| ||||| | Sbjct 227181 CTTGTGCAAATAAATCACGAACACGACTAGCGCCAACACCAACAAACATCTCAACAAACT 227240 Query 11736 TTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 || | ||| | | | || || || || ||| || || | |||| || || Sbjct 227241 CTGAACC--TGCAATAGACAAAAAGGGTACTCCTGCTTCTCCAGCTACAGCTCTTGCAAG 227298 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||||| ||| | |||| | |||| || ||||| || || Sbjct 227299 TAGTGTTTTTCCTGTTCCTGGTGGTCCCTCAAGAATAACTCCTCTTGGAATCTTTGCTCC 227358 Query 11854 -ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTT 11912 | | | || | | || | | ||| ||||| |||| |||||||||||| ||| Sbjct 227359 TAGCTGCGTAA-AACGATCTGAATCCTTCAGAAATGAAACAACCTCTTCAAGTTCCACTT 227417 Query 11913 TGGCCGCGTCAATCCCCTCAACATC 11937 | || | ||| || ||||||| Sbjct 227418 TTGCTCCATCACAACCTGCAACATC 227442 >seq36 Length=158315 Score = 104 bits (114), Expect = 3e-17 Identities = 269/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| || ||||| || || |||| |||||||| ||||||||||| ||||||||| || Sbjct 64796 TCAAATCCGTCCATTTCTGTTAGTAGTTGATTAAGAGTTTGTTCTCTTTCATCATTTCCT 64855 Query 11597 GGCATACC---ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| | || | ||| || || |||||||| ||||| || || ||| Sbjct 64856 ---CCACCGATACCTGTACCTCTTTGTCGACCGACAGCATCAATTTCATCTATAAATACA 64912 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| ||| |||||| || ||| ||| ||||| | || || || ||||| Sbjct 64913 ATACAAGGTGCATTTTCTTTAGCTTTTTTAAAAAGATCTCTTACTCTAGATGCTCCCACT 64972 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAG-AGCACTGGATGAATGGGACATTTGATTC 11772 || |||||||| || ||||| | | ||| | ||| | ||||| ||| || ||| Sbjct 64973 CCTACAAACATTTCGACAAATTCAGATCCAGAAATACT-AAAAAATGGTACACCTGCTTC 65031 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 ||| || || ||| || | || || || || || ||||| ||| | || | | Sbjct 65032 ACCGGCAATAGCTTTAGCTAAAAGAGTTTTACCTGTCCCTGGTGCACCAACAAGTAATAC 65091 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||| || || | |||||| | || | |||| || || | || | |||| || Sbjct 65092 TCCTTTTGGAATTCTAGCACCAATAGCAGTAAATCTTTCTGGCTTTTTTAAAAAAGTTAC 65151 Query 11893 AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||| || | || || || || || | ||||| || ||| |||| Sbjct 65152 AATTTCCTGAAACTCTTCCTTAGCTTCTTCAATTCCTGCAATATCA 65197 >seq8 Length=268242 Score = 100 bits (110), Expect = 4e-16 Identities = 258/385 (67%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| |||||||| || || | ||| ||||| | ||||||||||| |||||||| || Sbjct 226441 TCAAACCCATCCATTTCCGTCAATAACTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 226500 Query 11597 GGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||| ||||| | || ||||| || || |||||||| || | |||| Sbjct 226501 CCAGCAACTCCTGCACCTCGTTGTCTACCTACCGCGTCTATTTCATCAATAAAAATAATA 226560 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || |||| || ||| |||| | || ||||| | | ||||| || Sbjct 226561 CACGGAGCATTCTTTTTGGCTTGCG----CAAATAAGTCACGAACACGACTAGCACCAAC 226616 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGAT 11770 ||||||||||| || ||||| | || | ||| | | | ||| | || | | Sbjct 226617 TCCAACAAACATTTCTACAAATTCTGAACC--TGCAATAGAAAAGAAAGCAACTCCAGCT 226674 Query 11771 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGG 11830 ||||| || | |||| ||| | | |||||||| || || || |||| | | || | Sbjct 226675 TCACCTGCAACTGCTCTGGCCAACAAAGTCTTTCCAGTTCCAGGAGGACCCTCCAAAATG 226734 Query 11831 GCGCCTCGGGGGATCTTGGCACC-ACTT-CCAAAATATCTCTCGGGTTGCTTGAGAAAAT 11888 |||||| || | || ||||| |||| | ||||| ||| || |||| | ||| | Sbjct 226735 ACGCCTCTAGGCACTTTTGCACCAACTTGTGAGAATATTTCT-GGATTGC-GAACAAATT 226792 Query 11889 CCACAATCTCTTCAAGTTCATCTTT 11913 | || | |||| |||||| |||| Sbjct 226793 CAACTACTTCTTGAAGTTCTACTTT 226817 >seq63 Length=104598 Score = 93.3 bits (102), Expect = 5e-14 Identities = 329/505 (65%), Gaps = 8/505 (2%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||||||||| || || | | || | ||| | ||||||| | ||||| | Sbjct 58236 CTTGTCGATCAAAACGACCTGGTCGTAACAAAGCCTTATCTAAGATATCCGCTCGATTGG 58295 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCA-TTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 | | |||| || |||| || || | ||| ||| |||||||| || | ||| Sbjct 58296 TTCCAGCAAATACAACAACACCTGTGGAAGATGT-AAAACCATCCATTTCTACTAATAAA 58354 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCT--GGCATA-CCACCAGCACTGCGTTGC 11620 ||| | ||| | |||||| ||||||||| || ||| | ||||| || || || Sbjct 58355 GCATTGAGTGTATTTTCTCTTTCATCATTTCCTCCAGCAAAGCCACCTCGACCTCG-AGC 58413 Query 11621 TTG-CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 | || || || ||||| |||||||| || |||||||| ||| ||| | | || Sbjct 58414 ACGTCCAACAGCGTCAATTTCATCAATAAACACAATACAAGGTGCATTGGCTCTAGCTTG 58473 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | |||||||||| | || | | | ||| ||||| |||||||| || | ||| | | Sbjct 58474 TGCAAAGAGATCCCTTACTCGACTTGGACCAACACCCACAAACATTTCAATAAAATCCGA 58533 Query 11740 GGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 || | | ||| || ||| | | || || || | || ||||| | || Sbjct 58534 ACCACTTGTCGAAAAGAAGGGAACACTAGCCTCTCCTGCAGTAGCCTTTGCGAGTAAAGT 58593 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCC 11859 |||||| || || || ||| | | | ||| ||| |||| ||||| || || Sbjct 58594 CTTTCCTGTTCCAGGAGGACCAACCAACAAGGCACCTTTCGGGAGTTTGGCTCCTAATCT 58653 Query 11860 AAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGC 11919 | |||| ||||||| | || | |||||| |||| || | ||| |||| || | Sbjct 58654 ACGATATTTCTCGGGCTTTTTTAAAAAATCAACAAATTCCATGATTTCTACTTTAGCTTC 58713 Query 11920 GTCAATCCCCTCAACATCACTGAAG 11944 ||| | ||| |||||||| | ||| Sbjct 58714 GTCCAACCCAGCAACATCATTAAAG 58738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028600776800