Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq26 104 3e-17 seq6 104 3e-17 seq21 86.0 7e-12 seq8 84.2 3e-11 >seq26 Length=183063 Score = 104 bits (114), Expect = 3e-17 Identities = 330/502 (66%), Gaps = 11/502 (2%) Strand=Plus/Minus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 ||||||||||||||| ||||| | || | || ||||| |||||||||| | |||| Sbjct 77612 TTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGAAATTGAATGC 77553 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 | |||| | ||||| || | |||| |||||||| ||||| |||||||| Sbjct 77552 AGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGACGGAATTGT 77493 Query 94560 TTTTGAGAATATCA-ATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCC 94617 ||| ||||| | | || | |||| | ||| || || || | | ||||| ||| Sbjct 77492 TTTGGAGAACCTTGCAGAAAGATTTTGTCG-TGATGTCCAGATTC-CAGAAGCACGATGT 77435 Query 94618 TTCTATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCAT 94676 || |||| | ||| | |||| ||| | ||| ||| || || | || || Sbjct 77434 TTTTATGGATTTCAAA-TAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTTCTTAT 77376 Query 94677 AGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGT 94736 || | |||||| |||| | || ||| | | |||||||| || || | Sbjct 77375 CGATACTTATATTCGAGATGCTCAAGAAAAGGCTCGTTTATTTGAAGCAATGGAACGTAT 77316 Query 94737 TCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTT 94795 ||| |||||| | || || || | |||||| | | ||| || ||| || | Sbjct 77315 TCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGG----ATCCAATCCTCTGCCT 77260 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 | ||||||||||| | | |||||||| ||| ||||| || || || |||||||| | Sbjct 77259 CTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTCTT 77200 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | || | || | |||| | || ||| |||| || |||||||| | |||||| || | Sbjct 77199 TTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAATG 77140 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 ||||||| || ||||| || || Sbjct 77139 AGCTTATTTCACGTGATGAAGG 77118 >seq6 Length=291449 Score = 104 bits (114), Expect = 3e-17 Identities = 172/244 (70%), Gaps = 16/244 (7%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9629 ||||| || || || || |||| ||||| ||||| || | ||||| ||||| |||| Sbjct 227003 CGATTAGTTGCTGCAATAACAATGATACCATTGTTTGCTT--CGAAACCGTCCATTTCTG 227060 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACT 9687 | | | |||||| | ||||||||| | ||||||||| ||| ||| ||| || | Sbjct 227061 TAAGCAATTGGTTGAGAGTTTGTTCTCTTTCATCATTTCCGCCCGCAAT--ACCGGCTCC 227118 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTT 9743 | |||| | || || ||||| || |||||||| || | || || || || |||| Sbjct 227119 TCTTTGCCTACCTACTGCATCTATTTCATCAATAAAAATAATACAAGGAGCATTCTTTTT 227178 Query 9744 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 9803 || | | |||| | ||| || ||||| | ||||| ||||||||||||||||| | Sbjct 227179 GGCTTGTG----CAAATAAATCACGAACACGACTAGCGCCAACACCAACAAACATCTCAA 227234 Query 9804 CAAA 9807 |||| Sbjct 227235 CAAA 227238 >seq21 Length=200491 Score = 86.0 bits (94), Expect = 7e-12 Identities = 327/506 (65%), Gaps = 7/506 (1%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||| | ||| ||||| | ||| || ||||| || || | || | ||||| | ||||| Sbjct 52818 GATTTGACGGTCAAATCTACCGGGTCGAAGCAGTGCATTGTCCAAAATATCTGCTCGATT 52759 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAG 9636 || | ||| ||||||| ||| | | | ||| |||||||| || || | Sbjct 52758 AGTTCCTCCGAACACAACAACACCACTATTTGGAGAAAATCCATCCATTTCCACTAACAA 52699 Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG--C 9694 || || | ||| | ||| | ||||||||| | ||| ||| | || | | | | Sbjct 52698 CTGATTTAAAGTATTTTCTCTTTCATCATTACCGCCAATAAGTCCACCTCTACCTCGAGC 52639 Query 9695 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 | | ||| |||||||| |||||||| || | || || || | || |||||| Sbjct 52638 TCTACCAATTGCATCAATTTCATCAATAAAAATTATACAAGGAGCAAGTTTGCGAGCTTG 52579 Query 9754 TTCAAAGAGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | |||| || |||| || || ||||| || ||||| ||||||||||||| ||||| || Sbjct 52578 TGCAAAAAGGTCCCTGACGCGACTTGGA-CCAACACCCACAAACATCTCCATAAAGTCTG 52520 Query 9813 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 || | ||| | | ||| || || |||||| || ||| | || || |||||| Sbjct 52519 -AGCCGCTCATAGTCAAGAAAGGAACGCCAGATTCTCCTGCAGTTGCCTTTGCAAGAAGA 52461 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 9931 || || || || || || || | || |||||| || |||||||||||| || Sbjct 52460 GTTTTGCCAGTTCCAGGAGGTCCATATAACAGTGCACCTTTCGGTATCTTGGCGCCAATT 52401 Query 9932 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCG 9991 | ||| | ||||| | ||| | ||| |||| ||| || ||| ||||| Sbjct 52400 TCCTTGTAACGTTCAGGATTCTTCAAGTAATAAACAAACTCTATCACTTCGGTCTTGGCT 52341 Query 9992 GCGTCAATCCCCTCAACATCGGTAAA 10017 | || | || ||||||| |||| Sbjct 52340 TCATCCAGTCCAGCAACATCTTTAAA 52315 >seq8 Length=268242 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/284 (67%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 9610 ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC 9669 |||||| |||||||| || ||||| | || || | ||||||||| | |||||||||| | Sbjct 226440 ATCAAACCCATCCATTTCCGTCAATAACTGATTCAGAGTTTGTTCTCTTTCATCATTCCC 226499 Query 9670 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 | | | || |||| ||||| | || || || || || |||||||| || | || Sbjct 226500 TCCAGCAACTCCTGCACCTCGTTGTCTACCTACCGCGTCTATTTCATCAATAAAAATAAT 226559 Query 9730 GCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || || |||| || ||| |||| | || || ||||| | || || | Sbjct 226560 ACACGGAGCATTCTTTTTGGCTTGCG----CAAATAAGTCACGAACACGACTAGCACCAA 226615 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9844 | ||||||||||| || ||||| | || | | | || | | ||| | || || | Sbjct 226616 CTCCAACAAACATTTCTACAAATTCTGAACCTGCA-ATAGAAAAGAAAGCAACTCCAGCT 226674 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| |||| |||| ||| | | |||||| || || || || Sbjct 226675 TCACCTGCAACTGCTCTGGCCAACAAAGTCTTTCCAGTTCCAGG 226718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257643100920