Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1 104 1e-17 >seq1 Length=465833 Score = 104 bits (114), Expect = 1e-17 Identities = 308/469 (66%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 64847 TCAATGATTTCTAACGGATTATAACACATAATGTCAGTACTAAATCCTGTGCCAATACCC 64906 ||||||| ||| || || ||||| || || |||| |||| || || ||||| Sbjct 41493 TCAATGACATCTTTTGGGTTGTAACAAGGAACGTTAGTAGACCATCCAGTACCGATACCT 41552 Query 64907 TTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGCTCAA-CAAT 64965 | | || || | ||||| | |||||||| || |||| | | || |||| | || Sbjct 41553 TCAGCACCGTTCACTAAAACGAGAGGAATAATAGGACAATAATAATTGGGTTCAATCGAT 41612 Query 64966 GAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACG 65025 || ||||| || || ||||| | | | ||||||||| ||| |||||| | | |||| Sbjct 41613 -AGTCCATCTTCTTCTAAATAGTGAAGTACGGCATCATCTGCTTCTGGAAAGAGATAACG 41671 Query 65026 AGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG 65085 || || | | | ||| | ||||| | | || || ||||| ||| | | Sbjct 41672 TGTAATGGGAGCAAGTCTGGTAAATATATAACGAGCAGAAGCAGCGTCTTTTCCGCCTTG 41731 Query 65086 T---CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAA 65142 | || || ||||||||||| || | || | ||| ||||| | ||| | ||| Sbjct 41732 TAAACGAGTACCAAACTGACCGGAAGGAACCAAAAGATTGATATTACACGCACCTACAAA 41791 Query 65143 ATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||| || |||| ||| | ||| | ||| | | | | ||| || |||||||| ||| Sbjct 41792 ATTTTGTGCCAATCCTACAATCGTTGCCATGAGAGACATTTCTCCATGATGATAAGCTGC 41851 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTT 65262 || ||| | | ||| || ||||| |||||||| || || | || || |||||||| Sbjct 41852 ATTTTCTGCTATATAACCGGCCAATTGCGCAACTTTGATATCTCTCGTCAACTTCTTTTT 41911 Query 65263 AAATGCAG-AATACAATATTTTCCGTAAACTAATTTTCAATCCATCCAT 65310 ||| |||| | | || | ||| ||| |||| |||||| ||||| || Sbjct 41912 AAA-GCAGCCAAATAAAACTTTACGTTGACTAGGTTTCAAACCATCAAT 41959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678756272450