Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq54 176 5e-39 seq9 168 8e-37 seq6 96.9 4e-15 seq26 91.5 2e-13 seq62 87.8 2e-12 >seq54 Length=107229 Score = 176 bits (194), Expect = 5e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||||| || ||||||||||||||||| || || | Sbjct 11700 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11641 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| | ||| | || || || || || || ||||||||||| ||||| Sbjct 11640 TGATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11581 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||||||||| ||||| || || | |||||| ||| |||||||||| Sbjct 11580 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11521 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | | || ||||| || |||||||| | || ||||| Sbjct 11520 TATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGT 11484 Score = 174 bits (192), Expect = 2e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||||| || ||||||||||||||||| || || | Sbjct 11244 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11185 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | ||| | || || || || || || ||||||||||| ||||| Sbjct 11184 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11125 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||||||||| ||||| || || | |||||| ||| |||||||||| Sbjct 11124 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11065 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | | || || || || |||||||| | || |||||||| Sbjct 11064 TATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCT 11026 Score = 167 bits (184), Expect = 3e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||||| || ||||||||||||||||| || || | Sbjct 11472 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11413 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | ||| | || || || || || || ||||||||||| ||||| Sbjct 11412 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11353 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||||||||| ||||| || || | |||||| ||| |||||||||| Sbjct 11352 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11293 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | | || || || || |||||||| | || ||||| Sbjct 11292 TATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGT 11256 Score = 167 bits (184), Expect = 3e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || ||||| || ||||||||||||||||| || || | Sbjct 11928 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11869 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | ||| | || || || || || || ||||||||||| ||||| Sbjct 11868 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCA 11809 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||||||||| ||||| || || | |||||| ||| | |||||||| Sbjct 11808 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAA 11749 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | | || ||||| || |||||||| | || ||||| Sbjct 11748 TATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGT 11712 >seq9 Length=249065 Score = 168 bits (186), Expect = 8e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || ||||||||||||||||| ||||| | Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| |||| ||||| |||||||| || ||||| |||||||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| || | || |||| |||||| | ||||||||||| Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | ||||| || || || ||||| | || |||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGT 144395 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||||||||||||||| ||||| | Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | ||| | || ||||| |||||||| || ||||| |||||||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| || | || |||| |||||| | ||||||||||| Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 | ||||| || || || ||||| | || |||||| | | || |||| Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGAC 144636 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || || ||||||||||||||||| ||||| | Sbjct 143951 AATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTC 144010 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||| |||| ||||| |||||||| || ||||| |||||||| Sbjct 144011 AGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 144070 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||| || | || |||| ||||| | ||||||| || Sbjct 144071 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTACAA 144130 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | | ||||| || || || ||||| | || |||||| Sbjct 144131 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGT 144167 >seq6 Length=291449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || ||| | || || || || || || | || ||||| | | Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| |||| | || ||||| || || || || ||||||||||| || Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 274438 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || |||||||| || ||||| | || || | | || || | || |||||| Sbjct 274439 CAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAAT 274498 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || ||| | ||| | || ||| Sbjct 274499 ATCCAGAAAGAGTCTACTTTACATTTGGTTTTG 274531 >seq26 Length=183063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 267/406 (66%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 64444 GCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAA-TTTGGACCTAAATTTTACAAA 64502 || ||||| ||||| ||||||||||| || ||||| ||| | | ||||| Sbjct 77521 GCTTTCTTTGCATCTTCCGACGGAATTGTTTTGGAGAACCTTGCAGAAAGATTTT-GTCG 77463 Query 64503 GGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAAAGTAT 64562 ||||| ||||| ||||| || || | || |||| | ||| | | |||| ||| Sbjct 77462 TGATGTCCAGATTCCAGAAGCACGATGTTTTTATGGATTTCAAATAGCAATGGAAAATAT 77403 Query 64563 TCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGA 64622 |||| || || ||||| || | || || | | | |||| ||| || || |||| Sbjct 77402 TCATTCGGAAACTTATTCTCTTCTTATCGATACTTATATTCGAGATGCTCAAGAAAAGGC 77343 Query 64623 TGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCAT 64682 | | | || || || || | | || | || ||||||||| | ||||| | Sbjct 77342 TCGTTTATTTGAAGCAATGGAACGTATTCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTT 77283 Query 64683 CCGGTGGAT-GAATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGG 64741 | ||||| |||| | | | || |||| | ||||| | | || ||||| ||| | Sbjct 77282 AAGATGGATCCAATCCTCTG-CCTCTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAG 77224 Query 64742 AAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGA 64801 | ||||| || |||||||| || || ||||| || || ||| | |||||| | || || | Sbjct 77223 AGGGAATATTTTTTTCTGGTTCTTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTA 77164 Query 64802 TGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||||| || | || || || ||||| || || || || || || Sbjct 77163 TGCCAGGATTGACCTTCTCTAATGAGCTTATTTCACGTGATGAAGG 77118 >seq62 Length=89227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| | ||||| | | || ||||| || ||||| || ||||||||||| || || Sbjct 48292 TTTGCTGAGCGTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTTTTCTGGTTCTTTT 48233 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 ||||| || || ||| |||| || |||||| ||||||| ||||| | || || || ||| Sbjct 48232 TGTTCCATATTTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTACTTTCTCCAATGAG 48173 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 |||| || || || || || | || |||||||| Sbjct 48172 TTGATATCACGAGATGAAGGCTTGCATTGTGAATTTGC 48135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307313194960