Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq54 134 9e-27 seq9 105 4e-18 seq6 95.1 8e-15 >seq54 Length=107229 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| |||||||||||||| || ||||| ||| || ||||| ||||| ||||| Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11076 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||||||||| ||||| |||||||| |||||||| || || Sbjct 11077 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11136 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| |||| || ||| | ||| || || || || Sbjct 11137 ATTCCTTCTTTATCTTGTATC-TTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTAC 11195 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | ||||||||||| || ||||| Sbjct 11196 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||||| |||||| || ||||| ||| || ||||| ||||| ||||| Sbjct 11245 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11304 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||||||||| ||||| |||||||| |||||||| || || Sbjct 11305 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11364 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| |||| || ||| | ||| || || || || Sbjct 11365 ATTCCTTCTTTATCTTGTATC-TTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTAC 11423 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | ||||||||||| || ||||| Sbjct 11424 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||||| |||||| || ||||| |||||| ||||| ||||| ||||| Sbjct 11473 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGAT 11532 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||||||||| ||||| |||||||| |||||||| || || Sbjct 11533 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11592 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| |||||| | || || | ||| || || || || Sbjct 11593 ATTCCTTCTTTATCTTGTATCTTT-GACTTGACATTCTCAATAGTATCAGAAGGTTCTAC 11651 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | ||||||||||| || ||||| Sbjct 11652 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||||| |||||| || ||||| |||||| ||||| ||||| || || Sbjct 11701 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGAT 11760 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||||||||| ||||| |||||||| |||||||| || || Sbjct 11761 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGA 11820 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| |||| || ||| | ||| || || || || Sbjct 11821 ATTCCTTCTTTATCTTGTATC-TTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTAC 11879 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | ||||||||||| || ||||| Sbjct 11880 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11927 >seq9 Length=249065 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | |||||||||||| || || || ||| |||||||| ||||| ||||| Sbjct 144407 GCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGA 144348 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | |||||||| ||||| || ||||| |||||||| || || Sbjct 144347 CAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144288 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| || | || ||| | ||| || ||| | || | Sbjct 144287 AATACCTTCCTTGTCT-TGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAA 144229 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || || || || || | || |||||||| || |||||| Sbjct 144228 CTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATG 144179 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | |||||||||||| || || || ||| |||||||| ||||| ||||| Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||| ||||| || ||||| |||||||| || || Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| ||||| || | | ||| || ||| | || ||| Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || || || || | || |||||||| ||||||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCATG 144407 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | |||||||||||| || || || ||| |||||||| || || ||||| Sbjct 144179 GCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGA 144120 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | |||||||| ||||| || ||||| |||||||| || || Sbjct 144119 CAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144060 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| || | || ||| | ||| || ||| | || | Sbjct 144059 AATGCCTTCCTTGTCT-TGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAA 144001 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| | || || || || || || | || |||||||| || ||||| || Sbjct 144000 CTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 >seq6 Length=291449 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| | ||| ||| || || || |||||||| ||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | || || |||||||| || | | |||||| || || || Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || || ||| ||||| ||| | | ||||| || || ||| Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727939112889