Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq36 428 5e-115 >seq36 Length=158315 Score = 428 bits (474), Expect = 5e-115 Identities = 666/944 (71%), Gaps = 6/944 (1%) Strand=Plus/Minus Query 176149 TACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TT 176207 ||| | ||||||||||| || | ||||| || | || || ||| || | ||| || Sbjct 27729 TACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTACATC-TGTATT 27671 Query 176208 TATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGC 176267 ||| ||| |||||| || || ||||| || ||||| ||||||||| | |||||||| | Sbjct 27670 TATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTC 27611 Query 176268 AGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGC 176327 |||||| | | |||||||| || || || | || || | || || | || || || Sbjct 27610 AGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGC 27551 Query 176328 AATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 176387 ||| ||| |||| ||||| || || |||||||||||| | | || |||||||| || || Sbjct 27550 AATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAA 27491 Query 176388 TGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGG 176447 ||| || || || || | | || || |||||| |||| || || | || || ||||| Sbjct 27490 TGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGG 27431 Query 176448 ACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTC 176507 ||| |||||||| | || || | || || |||||||||||||| || || | ||| Sbjct 27430 ACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTC 27371 Query 176508 TGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTT 176567 || || || ||||||| | || || || | ||||||| | || ||||| ||| Sbjct 27370 AGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTT 27311 Query 176568 CTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGC 176627 || ||||||||||| | || ||||| ||||| || || |||||||| || |||||||| Sbjct 27310 TTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGC 27251 Query 176628 AGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGG 176687 || || || ||| ||||||| || || |||||| | || || || ||||| ||||| || Sbjct 27250 TGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGG 27191 Query 176688 ATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTA-GAGAGACAA 176746 || | || ||||||||||| |||||| ||||| ||| || | || |||| Sbjct 27190 TTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTC-AAGTTTGATACGTGAAACAA 27132 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | || || || || |||| | ||||| ||||| || |||||| | || || || |||| Sbjct 27131 CAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACA 27072 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 | || ||||| || ||||| ||||| | | || ||||| ||||| || ||||| | Sbjct 27071 TCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATT 27012 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 || | | || |||||| | || || ||||| || || || ||| | || | Sbjct 27011 CACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTT 26952 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| | ||||||||||||| ||| | || || || || || || || ||||| | | Sbjct 26951 TAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTG 26892 Query 176987 ACAACTC-TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 | ||| || | ||| ||| ||| |||| ||||| | || |||||||| | || Sbjct 26891 A-TTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGA 26833 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 || ||||| ||||| || |||||||| || ||||| || || || Sbjct 26832 ATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603491133586560