Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq6 91.5 1e-13 seq54 89.7 4e-13 >seq9 Length=249065 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| |||||||| ||||| |||||||| |||||| |||| || ||| | Sbjct 143949 AAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCC 144008 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || | | || ||||| || || ||||| ||||| |||| || Sbjct 144009 TCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGAC 144068 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || |||||||| || ||||| ||||| || | || | ||||| || ||| Sbjct 144069 CAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTAC 144128 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || ||||||||| || | || ||||| ||||||||| | || ||| Sbjct 144129 AATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGC 144179 >seq6 Length=291449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| | ||||| ||| || ||| | || || ||| | Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| || || || ||||||||| |||| | Sbjct 274379 GA-----TACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAG 274433 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | || || | | |||||||||||||| || ||||| |||| | | | |||| || ||| Sbjct 274434 ATCAACAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTT-TCTGAT 274492 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || || ||||| |||||| ||||| |||||||||||| Sbjct 274493 TATAATATCCAGAAAGAGTCTACTTTACATTTGGTTTTG 274531 >seq54 Length=107229 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||||||||| || || |||||| |||| || ||| | Sbjct 11244 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11185 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || ||||| ||| ||| || |||||||| |||| || Sbjct 11184 TGATACTATTGAGAA--CGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGAC 11127 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| || |||||| | || |||| || | | || || || Sbjct 11126 CAACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTAT 11067 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || |||||| ||| | || ||||| |||||| || | || || Sbjct 11066 AATATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGG 11017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||||||||| || || |||||| |||| || ||| | Sbjct 11472 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11413 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || ||||| ||| ||| || |||||||| |||| || Sbjct 11412 TGATACTATTGAGAA--CGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGAC 11355 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| || |||||| | || |||| || | | || || || Sbjct 11354 CAACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTAT 11295 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || |||||| ||| | || ||||| |||||||| | || || Sbjct 11294 AATATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||||||||| || || |||||| |||| || ||| | Sbjct 11700 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11641 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||| ||| || |||||||| |||| || Sbjct 11640 TGATACTATTGAGAAT--GTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGAC 11583 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| || |||||| | || |||| || | | || || || Sbjct 11582 CAACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTAT 11523 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || ||| ||| | || ||||| |||||||| | || || Sbjct 11522 AATATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11473 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||||||||| || || |||||| |||| || ||| | Sbjct 11928 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11869 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || ||||| ||| ||| || |||||||| |||| || Sbjct 11868 TGATACTATTGAGAA--CGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGAC 11811 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| || |||||| | || |||| || | | || || || Sbjct 11810 CAACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTAT 11751 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || ||| ||| | || ||||| |||||||| | || || Sbjct 11750 AATATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860522047391