Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 149 1e-30 seq54 145 2e-29 seq63 127 5e-24 >seq9 Length=249065 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || ||||||||||| || || || || | | || | |||||||||| ||| Sbjct 144155 GTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTG 144096 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || || || | ||||||||||| || |||| ||||||||||| || ||||| Sbjct 144095 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 144036 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || |||||||| || || || ||| |||||| || ||||| || ||||| || || Sbjct 144035 AGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 143976 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||| ||||| | |||||||| Sbjct 143975 GAGAGTCTTCACAAATATTTGCATTTT 143949 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || ||||||||||| || ||||| || | | || | |||||||||| ||| Sbjct 144383 GTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTG 144324 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || || || | ||||||||||| || |||| ||||||||||| || ||||| Sbjct 144323 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTT 144264 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || |||||||| || || || ||| |||||| || ||||| || ||||| || || Sbjct 144263 AGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 144204 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| | ||||| Sbjct 144203 GAGAGTCTTCACAAATATTTGCAT 144180 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || ||||||||||| || ||||| || | | || | |||||||||| ||| Sbjct 144611 GTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTG 144552 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || || || | ||||||||||| || |||| ||||||||||| || ||||| Sbjct 144551 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTT 144492 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| || || || ||| |||||| || ||||| || ||||| || || Sbjct 144491 GGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 144432 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| | |||||| Sbjct 144431 GAGAGTCTTCACAAATATCTGCAT 144408 >seq54 Length=107229 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| |||||||| || || ||||| || | || || | || ||||| || || Sbjct 11040 GTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTG 11099 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || ||||| | ||||||||||||||||||| |||||| || || || ||||| Sbjct 11100 TTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTT 11159 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || ||||| || || || ||||| ||| || || ||||| || |||||||| || Sbjct 11160 TGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11219 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| | |||||| Sbjct 11220 AAGAGTTTTCACAAAGATTTGCATT 11244 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| |||||||| || || ||||| || | || || | || ||| Sbjct 11260 AGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCT 11319 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | ||||||||||||||||||| |||||| || || Sbjct 11320 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 11379 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| || || || ||||| ||| || || ||||| || ||| Sbjct 11380 TGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11439 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| || ||||| | |||||| Sbjct 11440 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || || || ||||| |||| || || | || ||| Sbjct 11716 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCT 11775 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | ||||||||||| ||||||| |||||| || || Sbjct 11776 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCT 11835 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| || || || ||||| ||| || || ||||| || ||| Sbjct 11836 TGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11895 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| || ||||| | |||||| Sbjct 11896 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||| || || || ||||| || | || || | || ||| Sbjct 11488 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCT 11547 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | ||||||||||||||||||| |||||| || || Sbjct 11548 TCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCT 11607 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || || || || || ||||| ||| || || ||||| || ||| Sbjct 11608 TGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTC 11667 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| || ||||| | |||||| Sbjct 11668 TTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 >seq63 Length=104598 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||| ||||| ||||| |||||||| | | || ||||||||||| || || Sbjct 60740 GTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTG 60681 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||||||| || || | |||||||| || ||||| | ||||||||||| || ||||| Sbjct 60680 CTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTT 60621 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || |||||||| || || || || ||||| || | ||| || ||||| || || Sbjct 60620 GGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGT 60561 Query 211091 GAGAGTCT 211098 || |||| Sbjct 60560 AAGTGTCT 60553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145569242045