Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 134 3e-26 seq63 131 4e-25 seq6 123 6e-23 seq54 107 5e-18 seq36 95.1 3e-14 >seq9 Length=249065 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || |||||||| | |||||| || | |||||| | |||||||| | ||| Sbjct 144155 GTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTG 144096 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || || | ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 144095 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 144036 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| || || ||||||| ||| || || | || || ||||| || || Sbjct 144035 AGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 143976 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | ||| || | || | ||||||||| Sbjct 143975 GAGAGTCTTCACAAATATTTGCATTTT 143949 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || |||||||| | ||| || || | |||||| | |||||||| | ||| Sbjct 144383 GTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTG 144324 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || || | ||||||||||| || |||||||||||||||||||| ||||| Sbjct 144323 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTT 144264 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| || || ||||||| ||| || || | || || ||||| || || Sbjct 144263 AGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 144204 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||| || | || | |||||| Sbjct 144203 GAGAGTCTTCACAAATATTTGCAT 144180 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || |||||||| | ||| || || | |||||| | |||||||| | ||| Sbjct 144611 GTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTG 144552 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || || | ||||||||||| || |||||||||||||||||||| ||||| Sbjct 144551 TTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTT 144492 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| || || ||||||| ||| || || | || || ||||| || || Sbjct 144491 GGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGT 144432 Query 225690 CAAAGTTTT 225698 | ||| || Sbjct 144431 GAGAGTCTT 144423 >seq63 Length=104598 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | |||||||||||| |||| ||| ||||| | ||||||||| ||||||||||| || Sbjct 60740 GTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCTAGTTG 60681 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || || | |||||||| || || || ||||||||||||||||| ||||| Sbjct 60680 CTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGTATCTT 60621 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| || || || || | || || || || || || ||||| || || Sbjct 60620 GGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTCCCAGT 60561 >seq6 Length=291449 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || ||||| |||| ||| ||||| | | ||||| || ||||| | |||||| || Sbjct 274516 AGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCC 274457 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 || || ||||||| ||||| || || ||||||||||| || ||||| ||||| || Sbjct 274456 GGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATCTTGGATTT 274397 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| |||||| || || || | ||| || || || || || || || || ||||| || Sbjct 274396 CACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATGGTTTTTCCAGTCAACGT 274337 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 274336 TTTCACAAATATTTGCAT 274319 >seq54 Length=107229 Score = 107 bits (118), Expect = 5e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| ||||| || ||||| || | ||| || || | | ||| | || || Sbjct 11259 CAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTC 11318 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || || || ||||| ||||| | ||||||||||| || ||||| ||||| || || Sbjct 11319 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATC 11378 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| |||||| ||| || || || || || || | ||| || || | || || || Sbjct 11379 TTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11438 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | |||||| | || | ||||||| Sbjct 11439 CTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 107 bits (118), Expect = 5e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| ||||| || || || || | ||| || || | | ||| | || || Sbjct 11487 CAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTC 11546 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || || || ||||| ||||| | ||||||||||| || ||||| ||||| || || Sbjct 11547 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATC 11606 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| |||||| ||| ||| || || || || || | ||| || || | || || || Sbjct 11607 TTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11666 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | |||||| | || | ||||||| Sbjct 11667 CTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 107 bits (118), Expect = 5e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| ||||| || || || || | ||| || || | | ||| | || || Sbjct 11715 CAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTC 11774 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || || || ||||| ||||| | |||||||||||||| ||||| ||||| || || Sbjct 11775 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATC 11834 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| |||||| ||| || || || || || || | ||| || || | || || || Sbjct 11835 TTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11894 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | |||||| | || | ||||||| Sbjct 11895 CTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| || ||||| || | ||| || || | | ||| | || ||||| || || Sbjct 11040 GTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTG 11099 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| | ||||||||||| || ||||| ||||| || ||||| ||||| Sbjct 11100 TTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTT 11159 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | ||| || || || || || || | ||| || || | || || ||||| || || Sbjct 11160 TGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11219 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | |||||| | || | ||||||| Sbjct 11220 AAGAGTTTTCACAAAGATTTGCATT 11244 >seq36 Length=158315 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || |||||||||||||| || || ||||| ||||| ||||| || || ||||| ||| Sbjct 131629 AAAATCTGACCATCAGTAATTGAAATTACATTAGTAGGAATATATGCTGAGACATCTCCT 131570 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTTCAC 4590 ||||||||||| | || |||||| || || | ||| || || || |||| |||| || Sbjct 131569 GCTTGTGTTTCTATAATAGGTAAAGCCGTCATACTTCCCCCGCCTAATTTTTGATTTAAC 131510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524584060502