Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq26 239 4e-58 seq62 232 6e-56 >seq26 Length=183063 Score = 239 bits (264), Expect = 4e-58 Identities = 372/531 (70%), Gaps = 3/531 (1%) Strand=Plus/Plus Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 |||||| ||||| ||||||||||||||||| || | ||| || || ||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 ||||| ||||| | ||||||||||| | ||||||||| | ||| || |||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||||| || ||||| || ||||| || ||||| || | || ||| || | Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAG---GCAGAGGA 77269 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 || |||||| |||| ||||| | ||| ||||||| || || ||||| | || || Sbjct 77270 TTGGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | |||||| | ||||| | ||| |||||||||| || || || || ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||| ||||| |||||||| || || || |||||||| ||||| |||| ||||||| Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | || || || ||||||||||||| | | ||| || || || ||||| | Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || ||||| || ||||| || || | | || || | || | ||| ||||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCA 77569 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 | ||| || | | |||||| | ||||||| |||||||||| || || Sbjct 77570 ATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGC 77620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| ||||| ||||| |||||||| || || || || || || ||||| || Sbjct 76748 ACACCAGCCTTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAA 76807 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| |||||| ||||||||||||| | | | ||| ||| ||| | | | Sbjct 76808 GAAATGAGTTCCATCCAATCAAACGGATTTCGAGACTGGAAATATTTCTCATATCCCAAA 76867 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 || || | ||| || || || ||||| || |||||||| ||||| | || | || ||| Sbjct 76868 GCAACCAACAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATT 76927 Query 4428 CCAATTAAT 4436 || || ||| Sbjct 76928 CCTATCAAT 76936 >seq62 Length=89227 Score = 232 bits (256), Expect = 6e-56 Identities = 382/545 (70%), Gaps = 11/545 (2%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAA 4598 |||| | || ||||| ||||||||||| ||||| |||| || || ||| || || || Sbjct 48124 ACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATA-TCAACTCATTGGAG 48182 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | || ||||| || || | || || | ||||||||| | ||| || ||| Sbjct 48183 AAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCA 48242 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGG-- 4716 ||||||||||| |||||||| || ||||| || ||||| || | || ||||| Sbjct 48243 GAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGGAA 48302 Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 | | || ||||||||||| | ||| | ||||| || || || || | || | | Sbjct 48303 CATCGT-----ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTT 48357 Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 || |||| || || || ||||| ||| |||||||||| || || |||| Sbjct 48358 CGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTA 48417 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 |||||||| ||||||| |||||| ||||| |||||||| || || || || | | Sbjct 48418 AAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCG 48477 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||| | |||||||||||| ||| ||| | || | |||||||| || || || || | Sbjct 48478 CTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCAT 48537 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 || ||||||||||| ||||||||||| |||||||||| || || | | || Sbjct 48538 CAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAG 48597 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAACGACGCT 5075 ||||| | | ||||||| | || || ||||||||||| ||||| |||| | ||| Sbjct 48598 AATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTA-GCT 48656 Query 5076 TCCGC 5080 ||||| Sbjct 48657 TCCGC 48661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047346379189