Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19 223 5e-53 seq26 219 6e-52 seq62 188 1e-42 >seq19 Length=190679 Score = 223 bits (246), Expect = 5e-53 Identities = 491/728 (67%), Gaps = 6/728 (1%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||| | ||| || |||||||| | || |||||| |||| |||| || || Sbjct 26361 TTTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAG 26302 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||||| || || | || ||| | |||| | | |||| ||||||||| | || Sbjct 26301 CTTCATTGGGACAAAATAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAAT 26242 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | || | ||||| | || ||| | |||||| | || || |||||| ||||| ||||| Sbjct 26241 CGGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCT 26182 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 || | | ||| | ||| || | |||||| | |||||| || || | ||| || || | | Sbjct 26181 TTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAG 26122 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 |||| || ||| ||||| ||||| | |||||| || || | |||| | |||| | Sbjct 26121 CTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAA 26062 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 ||| |||| ||| || ||||| |||||||| || || ||||||| | |||| | Sbjct 26061 GCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCAC 26002 Query 78262 GAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT 78321 | |||| | || | | || || || || || | ||||| || | || || | || Sbjct 26001 GTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTT 25942 Query 78322 TCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTA 78380 | || ||||| || || || || || ||| || |||| ||||| | |||| || Sbjct 25941 TTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAG- 25883 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || | ||| | ||| || ||||| ||||| || || || ||||| ||||| || Sbjct 25882 GATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTAT 25823 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTC-AATAGCTGATTCTATGTCC-CATTGATGAATTC 78498 ||| ||| | || || || || |||| ||| ||| | ||| | ||| ||||| | Sbjct 25822 TTTCGAGACATATAATCATAAGTCTCCAATA-CTGCTTCCAAGTCATCCTTG-TGAATAC 25765 Query 78499 CTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCA 78558 | || ||||| | |||||||||||| || |||| ||| | | || || | | Sbjct 25764 CAACAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACACGTA 25705 Query 78559 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGT 78618 | || || || ||| |||||||| || ||||| || | || |||||||||| || | Sbjct 25704 ATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCAT 25645 Query 78619 AAATAATA 78626 |||||||| Sbjct 25644 AAATAATA 25637 >seq26 Length=183063 Score = 219 bits (242), Expect = 6e-52 Identities = 371/533 (70%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 |||||||||||| |||||||| | ||||||||| | ||| | || ||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | || ||||| ||||| | ||||| | ||||||||| | ||||| |||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||||| || ||||| || |||||||| | | ||| | || ||| | || Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTG 77272 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | | ||||| | |||||| |||| | |||||| || ||| || || | Sbjct 77273 GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTC 77332 Query 48377 AAAGAGAA-AG--tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||| | | || |||| || | || |||| || |||||||| || | |||| ||| Sbjct 77333 AAATAAACGAGCCTTTTCTTGA--GC-ATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||| || ||||||||||| ||||| || |||||||| |||||||||| ||||||| Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||||| || || |||||||| ||| || | ||||| || ||||| || || Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 ||||| || || ||||| || ||| |||| || | | | ||| ||| ||||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCA 77569 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 || | | || | |||| ||||| ||||||||| |||||||| || |||| Sbjct 77570 ATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| ||||| || ||||| ||||| || || || |||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAt-ttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||||| ||||| | | | |||| ||| | | |||| || | | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || | ||| ||||| || || ||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || |||| | ||| || |||||||| ||| || || ||||| || || || Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATCGACGATAAT 76995 Query 48089 C 48089 | Sbjct 76996 C 76996 >seq62 Length=89227 Score = 188 bits (208), Expect = 1e-42 Identities = 395/584 (68%), Gaps = 6/584 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| |||||||| | |||||||||| || || || || || || || ||| Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| | || ||||| || | ||||||||| | ||||| |||||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT-GTAT 48319 || |||||||| || ||||| || | | ||| | ||||| || | |||| Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTG-CTGGAACATCGTAT 48310 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | | |||||| || ||||| || ||||||| | |||| || || | || Sbjct 48311 CCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAGAA 48370 Query 48380 GAGAAAGtttttttCATTGC--TATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 | | ||||| ||| ||||| || |||||||| || | | | |||||| Sbjct 48371 CAAACGACGCTTTTC--TGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATT 48428 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || || || | |||||| || ||||||||||| || || ||||| | |||||| | | Sbjct 48429 TCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACT 48488 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || || |||| ||| || | ||||| || ||||| || || |||||| ||| ||| Sbjct 48489 TGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCA 48548 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 |||||||| || ||||| ||||| | || || ||| || |||||| || Sbjct 48549 AAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGAATTCCAATCT 48608 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | ||||| |||| || ||||||||| ||||||| || || || || |||| Sbjct 48609 CGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGTTTA 48668 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | | |||||| | || ||| || || || | |||||| Sbjct 48669 TATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665040105120