Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq26 248 1e-60 seq19 241 2e-58 seq62 212 9e-50 >seq26 Length=183063 Score = 248 bits (274), Expect = 1e-60 Identities = 373/530 (70%), Gaps = 0/530 (0%) Strand=Plus/Plus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 |||||||||||| |||||||| | |||||||| | ||| | || ||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | || ||||| ||||| | |||||| | ||||||||| | ||||| |||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||||| || |||||||| || ||||| || | | ||| | || |||| || Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTG 77272 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| ||| |||||| | ||||||||||| | |||||| || ||| || || | Sbjct 77273 GATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTC 77332 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||| | | ||||| | | |||| || ||| ||||| || | |||| ||| | Sbjct 77333 AAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGT 77392 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| |||||||| ||||| || || || |||||||| |||||||||| |||||| | ||| Sbjct 77393 TTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAAT 77452 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||| || || |||||||| ||| | | ||||| || ||||| || || || Sbjct 77453 CTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGC 77512 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| || |||||||| || ||| |||| ||||| | | ||| ||| ||||| || Sbjct 77513 AAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATC 77572 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | || | |||| ||||| ||||||||| ||||| || || |||| Sbjct 77573 TTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 104 bits (114), Expect = 3e-17 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| ||||| || || || ||||| ||||| || || || |||||||| || || | Sbjct 76757 TTTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGT 76816 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAt-ttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||||||||| | | | |||| ||| | | |||| || | | Sbjct 76817 TCCATCCAATCAAACGGATT-TCGAGACTGGAAATATTTCTCATATCCCAAAGCAACCAA 76875 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || | ||| ||||| || || |||||| ||||||| |||| |||||||||||| | Sbjct 76876 CAAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAA 76935 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC--CGATA 46573 | ||||||| | ||| || |||||||| |||| || || ||||| ||||| Sbjct 76936 TGCTACCGGTAATGACTCACAAATAAACTCTTTTTCACAAGATACTGCATCGACGATA 76993 >seq19 Length=190679 Score = 241 bits (266), Expect = 2e-58 Identities = 495/728 (68%), Gaps = 6/728 (1%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||| | | ||| | |||||||| | || |||||| |||| ||||||| ||| Sbjct 26361 TTTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAG 26302 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 |||||| ||||| | || ||| | |||| | | || | ||||||||| | || Sbjct 26301 CTTCATTGGGACAAAATAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAAT 26242 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCT 76676 | || | ||||| | || ||| | |||||| | || | |||||| ||||| ||||| Sbjct 26241 CGGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCT 26182 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 || | | ||||| || || | |||||| | |||||| || || | ||| || || | | Sbjct 26181 TTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAG 26122 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 | || || ||| ||||| ||||| | |||||| ||||| | |||| | |||| | Sbjct 26121 CTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAA 26062 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 ||| |||| |||||| ||||| || ||||| || || ||||||| | ||||| Sbjct 26061 GCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCAC 26002 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 | |||| | || | | || || || || || ||||||| || | ||||| | || Sbjct 26001 GTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTT 25942 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTA 76975 | || || ||||| || || || || || || |||| ||||| | |||| || Sbjct 25941 TTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAG- 25883 Query 76976 GACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCAT 77035 || | ||| | ||| || ||||| || || ||||| || |||||||| || || Sbjct 25882 GATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTAT 25823 Query 77036 TTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCC 77094 ||| ||| | || || || || | |||||||| | || | ||| ||||| || Sbjct 25822 TTTCGAGACATATAATCATAAGTCTCCAATACTGCTTCCAAGTCATCCTTG-TGAATACC 25764 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTA-CAGTCTTATTATTTATTTTCA 77153 ||||| || | |||||||||||| || |||||||||| || | || || | | Sbjct 25763 AACAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACT-TTGCCATCCACACGTA 25705 Query 77154 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGT 77213 | || || || ||| |||||||| || ||||| || | || |||||||||| || | Sbjct 25704 ATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATAAGAAAAGTCTCGATCAT 25645 Query 77214 AAATAATA 77221 |||||||| Sbjct 25644 AAATAATA 25637 >seq62 Length=89227 Score = 212 bits (234), Expect = 9e-50 Identities = 398/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| |||||||| | ||||||||||| || || || || || || || || Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| | || || || || | ||||||||| | ||||| |||||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAA 46807 || |||||||| || || || || || | | ||| | ||||| | | ||| | | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGGAACATCGT--A 48309 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 |||| || || |||||| || || || || ||||||| | |||| || || | | Sbjct 48310 TCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAGA 48369 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 | | | ||||| | ||||| || ||| ||||| || | | | ||||||| Sbjct 48370 ACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACATTT 48429 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | ||||| | ||||| |||||||||||||| || || ||||| | ||||| | | | Sbjct 48430 CCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTACTT 48489 Query 46988 GTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | || || |||| ||| || | | ||| || |||||||| || |||||| ||| |||| Sbjct 48490 GAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTGCAA 48549 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 |||||||||| ||||| ||||| | || || | | || |||||| || Sbjct 48550 AAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGAATTCCAATCTC 48609 Query 47108 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTAT 47167 | ||||| |||| || ||||||||| |||||||||| || || || ||||| Sbjct 48610 GTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGTTTAT 48669 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | | | |||||| | | |||| || ||||| | |||||| Sbjct 48670 ATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930541242560