Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq36 513 2e-140 >seq36 Length=158315 Score = 513 bits (568), Expect = 2e-140 Identities = 699/970 (72%), Gaps = 4/970 (0%) Strand=Plus/Minus Query 183205 TGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCA 183264 |||||||| ||||| | || || ||||| | ||||||||||| | | ||||| || Sbjct 27756 TGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCT 27697 Query 183265 ACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGA 183323 || | | |||| || ||||| || || ||| || | |||||||| || || || Sbjct 27696 ACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGA 27638 Query 183324 CATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTC 183383 || ||||| || | ||||| ||| | || || | | |||||||| || || || | Sbjct 27637 TATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAAC 27578 Query 183384 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGC 183443 |||||| |||| ||| | || || ||||| ||| | || |||||||| || |||||||| Sbjct 27577 TGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGC 27518 Query 183444 AGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTT 183503 |||||| | ||||| ||||| ||||| || |||||||| || | |||| || ||||| Sbjct 27517 AGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTT 27458 Query 183504 CCTCATTGGCGTCTTCTGC-TACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTA 183562 | | ||||| | || ||| || ||||| ||||| |||||||| || ||||| || | Sbjct 27457 CTTTATTGGAAT-TTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAA 27399 Query 183563 TGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCC 183622 ||||||||||||| || |||| || ||||||||||| || || ||||| || Sbjct 27398 TGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTA 27339 Query 183623 TGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCA 183682 | |||||||| | || |||||| |||| ||||||||||| | ||||| ||| | Sbjct 27338 TTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTA 27279 Query 183683 CCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACA 183742 | ||||| | |||| | || |||||||| || || || || | ||||| || || || | Sbjct 27278 CTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATA 27219 Query 183743 TGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 183802 || ||||||| |||||||| || || ||||| | || |||||||||||||| ||||| | Sbjct 27218 TGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTG 27159 Query 183803 TTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGT 183862 | ||||| || | |||||||| || ||| |||||| ||| ||||||| || | Sbjct 27158 TAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAAT 27099 Query 183863 TCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGA 183922 | || |||||| | || || || ||||| || ||||||||||| || ||||| | | | Sbjct 27098 TTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAA 27039 Query 183923 TCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGC 183982 | ||||| ||||| ||||| ||||| || || | || |||||| | ||| |||| Sbjct 27038 TTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGC 26979 Query 183983 CAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATG 184042 |||| || | || ||| | || || | ||| | ||||| |||||||||||| | |||| Sbjct 26978 CAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATG 26919 Query 184043 GTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAG 184102 | ||||| || || || || | ||||| |||||| | || | || || ||||| | Sbjct 26918 GATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTG 26859 Query 184103 ACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACT 184162 | || | || ||||| | | || || ||||| ||||| || |||||||| || |||| Sbjct 26858 ATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACT 26799 Query 184163 TCCCTCTCGA 184172 | ||||| || Sbjct 26798 TTCCTCTAGA 26789 Score = 486 bits (538), Expect = 2e-132 Identities = 729/1030 (71%), Gaps = 4/1030 (0%) Strand=Plus/Plus Query 185952 AGAGGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGC 186011 ||||| |||||||| | | ||||| ||||| ||||| || || ||||||||| | || Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 186012 TGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGC 186071 ||||| || || || |||||||| | | ||| | || | |||| |||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 186072 ACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCT 186131 ||||| |||||||| |||||||| || || || || |||||||| | || || | Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 186132 AATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTA 186191 |||||| | || || ||||| |||| |||||| | |||||| || || || || | Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCA-TTATTATT 40006 Query 186192 CTT-TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTG 186250 || ||||| || || ||||||| ||| | | | |||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 186251 GAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGA 186310 || |||| || | || || || ||||| | |||||||| |||| || ||||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAATTTGA 40126 Query 186311 AATCAGTC-GTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCG 186369 ||| || | | | || || || | ||||||||||| || |||||||| || || || | Sbjct 40127 AAT-AGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 186370 CTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTC 186429 | || |||||| ||||| || || || || ||||| || | ||||| || |||| Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 186430 CCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACT 186489 | |||||||| ||||| |||||| |||| | || || | ||||| ||||| || | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 186490 GGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGT 186549 |||| || |||||||| || ||||||||||| || || || || || || || | || | Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 186550 CAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACA 186609 || || ||||| | |||||||| ||||| | | |||||||||||| || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 186610 CATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACA 186669 | |||| || || | || ||| ||| ||||| ||||| ||||| || || || Sbjct 40426 CTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATC 40485 Query 186670 GATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCA 186729 | || |||||||| || || || |||| ||| || || | ||||| ||||| || | Sbjct 40486 GTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTA 40545 Query 186730 TGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTC 186789 |||| ||||| || |||| || | ||||| || ||||| || || || ||||| Sbjct 40546 TGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCAT 40605 Query 186790 TTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGT 186849 | || | ||||| ||||| ||||| ||| || | | || |||||||| || || | Sbjct 40606 TAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAAT 40665 Query 186850 TCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCAC 186909 | ||||| || ||||| || ||| | || | ||||||||| || | || ||||||||| Sbjct 40666 TTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAA 40725 Query 186910 CAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACG 186969 || ||||||||||||||||| |||||||| || || || || || ||| | || || | Sbjct 40726 CACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATG 40785 Query 186970 CTCTGTGATA 186979 | || | ||| Sbjct 40786 CCCTTTAATA 40795 Score = 123 bits (136), Expect = 3e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 170976 ACTTTTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGAT 171035 ||| |||| ||| |||| ||||||||||| | ||||| ||||||||| |||||| ||| Sbjct 69656 ACTATTGAGTGTCCTGATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGAT 69715 Query 171036 TTGAACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAAT-TGAGAGTGG 171094 | |||||| ||| | || || || ||||| || ||||| || ||| | | ||| || Sbjct 69716 CTACCCTATTCTTGTAGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGA-AGG 69774 Query 171095 TTCTGTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCAT 171154 || |||||||| ||||| || || || |||||||||||| | || |||| || | Sbjct 69775 ACAAGTAGATCAATCTGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGT 69834 Query 171155 TCTGACCTGCGTCTCATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGA 171211 || || || || |||||||||| || || ||| || ||| | || ||||| Sbjct 69835 CCTAACATGTGTTGCATATCCTACTTGTAATGCAACAATTTTAACTCATCAAGAAGA 69891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622067033043960