Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq36 520 1e-142 >seq36 Length=158315 Score = 520 bits (576), Expect = 1e-142 Identities = 739/1033 (72%), Gaps = 6/1033 (1%) Strand=Plus/Plus Query 165139 CAAGGAGGGGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTG 165198 ||| ||||| |||||||| | |||| || ||||| ||| | || || || || ||| Sbjct 39765 CAAAGAGGG--TGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTA 39822 Query 165199 TTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTA 165258 |||| ||||| || | || |||||||| | | ||||| ||||| || | ||| ||| Sbjct 39823 TTGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTA 39882 Query 165259 CTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGG 165318 | || || ||||| || || ||||||||| || || | || ||| ||| | || | Sbjct 39883 CAGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAG 39942 Query 165319 GTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTC 165378 | || ||| | || || ||||| || | ||| ||| | |||||| || || | Sbjct 39943 GATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTAT 40002 Query 165379 TGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGAC 165438 | || ||||||| || || ||||||| || || | | ||||| ||| |||| || | Sbjct 40003 TATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTC 40062 Query 165439 TCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAG 165497 | ||||||||| || | || || || ||||| | |||||||| || || || || Sbjct 40063 TTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAA 40121 Query 165498 TTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCT 165557 |||||| | || || | |||| ||| | || |||||||| || ||||| || || || Sbjct 40122 TTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCA 40181 Query 165558 ATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTC 165617 ||||| || || ||| || |||||||| ||||| || || ||| | ||||| || Sbjct 40182 ATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTT 40241 Query 165618 GCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCAT 165677 || || || || || ||||| ||||| ||||| | | || | ||||| |||||| Sbjct 40242 GCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCAT 40301 Query 165678 AACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTG 165737 || ||||| | ||||| ||||| |||||||| || || || || | || |||||||| Sbjct 40302 AATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTA 40361 Query 165738 CTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCA 165797 |||| ||| |||||||| | || ||||||||||| || | |||||||| ||| || Sbjct 40362 CTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCT 40421 Query 165798 AACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCT 165857 || ||||||| || ||| || || ||||||||||||||| ||||| || ||| Sbjct 40422 AATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCT 40481 Query 165858 AACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTC 165917 || ||||| ||||| || ||||||||| |||| || || || | ||||| || || Sbjct 40482 AATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTT 40541 Query 165918 TTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTC 165977 |||||||| ||||| || || | ||| | |||||||| |||||||||||||| || || Sbjct 40542 TTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTT 40601 Query 165978 GCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTA-GAGCTGCTGAGGATCC 166036 ||| | ||| | ||||| ||||||||||| ||||| || |||| | || || ||||| || Sbjct 40602 GCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGA-ATTACGTGCCGCAGAGGACCC 40660 Query 166037 AGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTT 166096 ||| ||||| || || ||||| ||||| | || || |||||||| | | || ||| | Sbjct 40661 AGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGAT 40720 Query 166097 GGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGG 166156 ||| | ||| ||||| ||||| || ||||| ||||| || || || || ||| | || Sbjct 40721 GGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGG 40780 Query 166157 CAACGCACTTTAA 166169 || || |||||| Sbjct 40781 AAATGCCCTTTAA 40793 Score = 455 bits (504), Expect = 4e-123 Identities = 697/988 (71%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 ||||||| || ||| ||| | ||| || || |||||| | || | |||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 163979 GGCGTCCTGATGATTCCCTGCCTG-CTGGCAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || | ||||| |||| | | || |||| || | ||| || || || | || | Sbjct 27714 GGAGTATTAATGAT-CCCTACATTACTAACAGCTACATC-TGTATTTATAATTGGATTTA 27657 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 | | |||||| || || || || || || || | ||||| || | || || | | | Sbjct 27656 TAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTAT 27597 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 ||||||| || || || |||||||| || | ||| | ||||| || || || | || | Sbjct 27596 ATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATT 27537 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 |||| || || |||||||||||| | | || |||||||| || || || ||||||| Sbjct 27536 TCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATG 27477 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 || | | || || |||||| | ||||| || | ||| || ||||| ||||| |||||| Sbjct 27476 AATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAAT 27417 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 164336 | || |||||||| |||||||||||||| |||||| | ||| |||||||| |||| Sbjct 27416 TAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTG 27357 Query 164337 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGC 164396 |||| | || || || | |||||||| | || |||||| ||| || |||| |||| Sbjct 27356 CAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGC 27297 Query 164397 CTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCC 164456 | | || || ||||| || || || | ||||| || ||||| ||||| || || || Sbjct 27296 CATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTT 27237 Query 164457 TCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTG 164516 | ||||| || || |||||| | || || || ||||| ||||| ||||| | || |||| Sbjct 27236 TAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTG 27177 Query 164517 CAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCC 164576 |||||||||| || || || ||||| || | ||||| || || || |||||||| Sbjct 27176 CAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTG 27117 Query 164577 AGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACG 164636 ||| ||||||| || ||||| || ||| | ||||| || ||||||||||| ||||| | Sbjct 27116 CAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATG 27057 Query 164637 GTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACT 164696 |||| ||||| | | ||||||||||| || ||| || || || || || | || | Sbjct 27056 GTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATT 26997 Query 164697 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCA 164756 ||||| | || |||||| || || |||| ||| | || || | || | ||||| | Sbjct 26996 TCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAA 26937 Query 164757 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 164816 ||||||| ||| | || || || || || || || || | | ||| ||| || | | Sbjct 26936 TGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAG 26877 Query 164817 TGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACG 164876 | | || || ||||| || || | || ||||| | | || || ||||| ||||| | Sbjct 26876 TAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATG 26817 Query 164877 AGCGTAATGCTCACAACTTCCCTCTCGA 164904 | |||||||| || ||||| ||||| || Sbjct 26816 AACGTAATGCACATAACTTTCCTCTAGA 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557651381695560