Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 116 9e-21 seq54 113 1e-19 >seq9 Length=249065 Score = 116 bits (128), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||||||||| || ||||| || | ||||| | |||||||| | Sbjct 144158 CAAG-TGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCA 144100 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | | || ||||| | | || |||||||| ||||||| Sbjct 144099 ACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 144040 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | ||||| || ||||||||||||||||| || | Sbjct 144039 TCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCC 143980 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||||||||| || | |||||||| Sbjct 143979 CAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||||||||| || || || || | ||||| | |||||||| | Sbjct 144614 CAAG-TGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCA 144556 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | | || ||||| | | || |||||||| ||||||| Sbjct 144555 ACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAA 144496 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | ||||| || ||||||||||||||||| || | Sbjct 144495 TCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCC 144436 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||||||||| || | |||||| Sbjct 144435 CAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||||||||| || || || || | ||||| | |||||||| | Sbjct 144386 CAAG-TGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCA 144328 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | | || ||||| | | || |||||||| ||||||| Sbjct 144327 ACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAA 144268 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | ||||| || ||||||||||||||||| || | Sbjct 144267 TCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCC 144208 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||||||||| || | ||||| Sbjct 144207 CAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq54 Length=107229 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| |||||||| || || || || || | || ||| | || ||||| | Sbjct 11037 CAAG-TGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAA 11095 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | || ||||| | | |||||||| || ||||| | Sbjct 11096 GTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTA 11155 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| |||| | | || ||| |||||||||||||||||||| || | Sbjct 11156 TCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTC 11215 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| ||||| |||| |||||| Sbjct 11216 CTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| |||||||| || || || || || | || ||| | || ||||| | Sbjct 11265 CAAG-TGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAA 11323 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | || ||||| | | |||||||| || ||||| | Sbjct 11324 GTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTA 11383 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| |||| | | || ||| |||||||||||||||||||| || | Sbjct 11384 TCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTC 11443 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| ||||| |||| |||||| Sbjct 11444 CTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || || || || || || | || ||| | || ||||| | Sbjct 11493 CAAG-TGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAA 11551 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | || ||||| | | |||||||| || ||||| | Sbjct 11552 GTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTA 11611 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| |||||| |||| | | || ||| |||||||||||||||||||| || | Sbjct 11612 TCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTC 11671 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| ||||| |||| |||||| Sbjct 11672 CTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || || || || || || | || ||| | || ||||| | Sbjct 11721 CAAG-TGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAA 11779 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | || ||||| | | |||||||| || ||||| | Sbjct 11780 GTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTA 11839 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| |||| | | || ||| |||||||||||||||||||| || | Sbjct 11840 TCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTC 11899 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| ||||| |||| |||||| Sbjct 11900 CTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814398818543