Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq36 554 5e-153 >seq36 Length=158315 Score = 554 bits (614), Expect = 5e-153 Identities = 749/1037 (72%), Gaps = 10/1037 (1%) Strand=Plus/Plus Query 178826 ACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGT 178885 |||||| |||||||| || || | ||||| ||||| || |||||||| || || ||| | Sbjct 39764 ACAAAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTAT 39823 Query 178886 TGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCAC 178945 ||| ||||||||| | || || || || | | || | || || || | ||| | || Sbjct 39824 TGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTAC 39883 Query 178946 GGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGG 179005 || ||||| || || || || |||||||| || || | |||||||| ||| | || || Sbjct 39884 AGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGG 39943 Query 179006 ATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACT 179065 ||||||||| | || ||||| ||||||| |||||| | | | ||||| || || | Sbjct 39944 ATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATT 40003 Query 179066 TCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACT 179125 || ||||||| ||||||||||| || ||||| | ||| ||| |||| || || Sbjct 40004 ATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCT 40063 Query 179126 ATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGT 179184 ||| ||||| || | || ||||| || || | |||||||| || || || || | Sbjct 40064 TTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAAT 40122 Query 179185 TTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAA 179244 ||||||| || | ||||||| ||| | || ||||||||||| || ||||| || |||| Sbjct 40123 TTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAA 40182 Query 179245 TTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTG 179304 |||| || ||||| || || ||||| || ||||| || || || | ||||| |||| Sbjct 40183 TTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTG 40242 Query 179305 CGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACA 179364 | || |||||||||||||| || || || || | | || |||| || ||||| | Sbjct 40243 CTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATA 40302 Query 179365 ACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGC 179424 | ||||| | || || || || ||||||||||| || || || || || |||||||| | Sbjct 40303 ATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTAC 40362 Query 179425 TTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAA 179484 ||||||| |||||||| || || |||||||| ||| | || ||||| | || | | Sbjct 40363 TTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTA 40422 Query 179485 ATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCA 179544 |||| |||| ||| || || |||||| |||||| || ||||| |||||||| || | Sbjct 40423 ATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTA 40482 Query 179545 ACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCT 179604 | ||||| ||||| || || |||||| | || || || || | ||||||||||| | Sbjct 40483 ATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTT 40542 Query 179605 TTATGTTGTTTGTTCCTGTCATGGGTCTTTGGAC---CTCTAGCATTGGTATTATTGGTC 179661 ||||| | ||||| || || | || | ||||| |||| |||||||| || || | Sbjct 40543 TTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCT---ATTGGTATCATAGGAC 40599 Query 179662 TTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGAT 179720 ||||| |||| ||| | || ||||| ||||| || ||||| | | || |||||||| Sbjct 40600 TTGCA-TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGAC 40658 Query 179721 CCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGG 179780 || || || ||||| || ||||| || || | || | ||||||||| || | || ||| Sbjct 40659 CCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGG 40718 Query 179781 ATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGA 179840 |||||| || ||||||||||||||||| |||||||| || || || || || ||| | Sbjct 40719 ATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGT 40778 Query 179841 GGCAACGCTCTGTGATA 179857 || || || || | ||| Sbjct 40779 GGAAATGCCCTTTAATA 40795 Score = 477 bits (528), Expect = 1e-129 Identities = 702/989 (71%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 ||||||| || ||| ||| | || ||| | |||||||| || | |||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 || || | ||||||||||| | || | ||| | |||||| || || | | || | Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTAT 27656 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 |||||||| || || || || ||||| || | ||||| || | || || || | || Sbjct 27655 AGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATA 27596 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 ||| || || || || |||||||| |||| ||| | ||||| || || || | || || Sbjct 27595 TGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTT 27536 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 |||||| || ||||||||||| ||| | ||||| ||||| || ||||| ||||||| | Sbjct 27535 CTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGA 27476 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 | | | | || |||||| | || || || | |||||| ||||| ||||| |||||| | Sbjct 27475 ATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATT 27416 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 || || || || |||||||| ||||| ||||| | ||| ||||| || || || Sbjct 27415 AAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGC 27356 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 ||| | |||||||| || | |||||| | || |||||| ||| || || | |||||| Sbjct 27355 AGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCC 27296 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 | ||||| ||| || || || | ||| | || |||||||| || || || || | Sbjct 27295 ATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTT 27236 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 ||||| || || || ||| |||| || |||||||| ||||| ||||| | || ||||| Sbjct 27235 AATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGC 27176 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 |||||||| ||||| || ||||| || | |||||||| || ||||| || ||| Sbjct 27175 AATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGA--GTCT 27118 Query 178248 G--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 | ||| ||||||| || || || |||||| | || || || |||||||||||||||||| Sbjct 27117 GCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCAT 27058 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 ||||| || || | | || |||||||| ||| ||| || || || || || | || Sbjct 27057 GGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACAT 26998 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 |||||| | || |||||| || || |||| ||| |||| || | ||| | ||||| Sbjct 26997 TTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACA 26938 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 |||||||| ||| | || || || || || || || || | | ||| ||| || | | Sbjct 26937 ATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGA 26878 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | || || ||||| || || | || ||||| | | || || ||||| ||||| Sbjct 26877 GTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCAT 26818 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGA 178574 || |||||||| || ||||| ||||| || Sbjct 26817 GAACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 18366 TTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTAC 18425 || |||| |||| ||||| ||||||||| ||||||||||||||||||||| | | ||||| Sbjct 58933 TTTGGGTCGGTGCCCGAGCGGTTAATGGGGGCGGACTGTAAATCCGCTGGTTTTTCCTAC 58992 Query 18426 GGGGGTTCAAATCCCTCCCTGCCCA 18450 | ||||||||||| ||| ||||| Sbjct 58993 GTTGGTTCAAATCCAACCCGGCCCA 59017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596303972487280