Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 152 1e-31 seq54 140 7e-28 seq63 125 1e-23 >seq9 Length=249065 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || |||||||| | | || |||||||| || | ||||| || ||||| Sbjct 144142 TCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAA 144083 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||||||||| ||||| || ||||||||||| ||||| | || ||| | Sbjct 144082 ATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTT 144023 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || || | ||| ||||| ||||| || ||||| || || | |||||| || Sbjct 144022 TCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACA 143963 Query 283089 AATATCTGCATTTT 283102 ||||| |||||||| Sbjct 143962 AATATTTGCATTTT 143949 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || || ||||| | | || || ||||| || | ||||| || ||||| Sbjct 144370 TCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAA 144311 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||||||||| |||||||| ||||||||||| ||||| | || ||| | Sbjct 144310 ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTT 144251 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || || | ||| ||||| ||||| || ||||| || || | |||||| || Sbjct 144250 TCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACA 144191 Query 283089 AATATCTGCAT 283099 ||||| ||||| Sbjct 144190 AATATTTGCAT 144180 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || || ||||| | | || || ||||| || | ||||| || ||||| Sbjct 144598 TCTTTTTGAATATTATAGTCTGACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAA 144539 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||||||||| |||||||| ||||||||||| ||||| | || || | Sbjct 144538 ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTT 144479 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || || | ||| ||||| ||||| || ||||| || || | |||||| || Sbjct 144478 TCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACA 144419 Query 283089 AATATCTGCAT 283099 ||||||||||| Sbjct 144418 AATATCTGCAT 144408 >seq54 Length=107229 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || || || ||||| | || || || || || || |||||||| || |||||| Sbjct 11053 TCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11112 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||||||| ||||| || || || ||||| ||||||| || ||| | Sbjct 11113 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11172 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || |||| ||| ||||| ||||| || ||||| || || | ||| || || Sbjct 11173 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11232 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 11233 AAGATTTGCATT 11244 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || || || ||||| | || || || || || || |||||||| || |||||| Sbjct 11281 TCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11340 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||||||| ||||| || || || ||||| ||||||| || ||| | Sbjct 11341 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11400 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || |||| ||| ||||| ||||| || ||||| || || | ||| || || Sbjct 11401 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11460 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 11461 AAGATTTGCATT 11472 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || || ||||| | || || || || || || |||||||| || |||||| Sbjct 11509 TCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11568 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||||||| ||||| || || || ||||| ||||||| || || | Sbjct 11569 ATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTC 11628 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || |||| ||| ||||| ||||| || ||||| || || | ||| || || Sbjct 11629 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11688 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 11689 AAGATTTGCATT 11700 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || || ||||| | || || || || || || |||||||| || |||||| Sbjct 11737 TCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAG 11796 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || |||||||||||||| ||||| || || || ||||| ||||||| || ||| | Sbjct 11797 ATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTC 11856 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || |||| ||| ||||| ||||| || ||||| || || | ||| || || Sbjct 11857 TCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACA 11916 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 11917 AAGATTTGCATT 11928 >seq63 Length=104598 Score = 125 bits (138), Expect = 1e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| || || ||| |||||| ||||| || || |||| | || | ||||| || Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 |||||| || || ||||| |||||||||||||| || || ||||| ||||||||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| | |||||| | || ||||| || |||| || ||||| | ||| || ||||| Sbjct 60626 TATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTT 60567 Query 283070 ACCCGTCAAAGTCT 283083 || || | |||| Sbjct 60566 CCCAGTAAGTGTCT 60553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733392887182