Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq62 217 2e-51 seq26 217 2e-51 >seq62 Length=89227 Score = 217 bits (240), Expect = 2e-51 Identities = 405/592 (68%), Gaps = 11/592 (2%) Strand=Plus/Plus Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 || |||| | || ||||| |||||||| | ||||||||| | ||||| ||||| | Sbjct 48121 TATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGG 48180 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 | || || | || ||||| || || ||||| || | ||||||||| | | ||| || | Sbjct 48181 AGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAAC 48240 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA--TGTTGC 23675 | |||||||| || || || || || |||||||| || | ||| | |||| || || Sbjct 48241 CAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGG 48300 Query 23676 ATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGT 23735 | || | ||||||||| | ||||| || ||| ||| ||||| || | Sbjct 48301 AACATCGT-----ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATT 48355 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAG 23795 ||| || || | || | | | |||||| | ||||| ||||| ||||| || || Sbjct 48356 TTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAG 48415 Query 23796 TAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCT 23855 |||| |||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| | Sbjct 48416 TAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACG 48475 Query 23856 AGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACC 23915 ||||| | | |||||| ||| || ||| | || || ||||| || || || || Sbjct 48476 CGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCC 48535 Query 23916 ATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT--CTTTCATCAGTTGAT 23973 |||| ||| ||||| || || | ||||| |||||| ||| || | || | | || Sbjct 48536 ATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAG 48595 Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 | || |||||| | ||||| |||| || ||||| ||||||||||| ||||| Sbjct 48596 AGAATT--CCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTA 48653 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATA 24085 || ||||| ||||| | | ||| || | ||| | ||| ||||||| Sbjct 48654 GCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAATA 48705 >seq26 Length=183063 Score = 217 bits (240), Expect = 2e-51 Identities = 365/526 (69%), Gaps = 3/526 (1%) Strand=Plus/Plus Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 |||||||||||| |||||||| | |||||||| | ||| | |||||||| || || Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624 ||||||||||| | ||||| ||||| | ||||||||| | | ||| || || ||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 || || ||||| ||||| ||||| ||||| | ||| | |||| | ||| | || Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAG-AGGATT 77271 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 || ||||| || | ||| | |||||| | | ||| ||| ||| ||||| Sbjct 77272 GGA--TCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 || || | | || ||||||| | |||| ||||| ||||| || || | | ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||| |||||||||||||| || || || ||||| ||||||||||||| ||||| | Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | || |||||| | ||||||||| || | || || |||||| || || || Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCA 23984 ||||||||||| | || | || ||||| | ||||| | ||||| ||||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCA 77569 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 ||| | | || | |||||||| | ||| ||| | ||||||||| Sbjct 77570 ATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485177446200