Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq79 100 6e-16 seq72 96.9 7e-15 seq66 96.9 7e-15 seq86 95.1 3e-14 seq82 93.3 9e-14 >seq79 Length=138238 Score = 100 bits (110), Expect = 6e-16 Identities = 195/284 (69%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 308356 GTACTCGAAGGGGGGTCGATTCACGTTGATGGCGAAGGGACGCTTATAACGACAAAAGAA 308415 || || ||||| ||||||||| || ||||| ||||| || ||| | |||||| ||||| Sbjct 24009 GTCCTGGAAGGAGGGTCGATTTCAGTAGATGGGGAAGGAACTCTTGTTACGACAGAAGAA 24068 Query 308416 TGTCTATTG--TCCACCGGCAGGAACCCCACC-ATGAGCCAACAAGATATTGAATATTAT 308472 ||| ||||| |||| || ||||| | ||| | || | ||||||||| || Sbjct 24069 TGTTTATTGAATCCAAAT--AGAAACCCATCGGATGTCCAAAGAGGATATTGAAAATCGG 24126 Query 308473 CTCAAAGAATACCTTAATGTCGAGAAAATCATCTGGCTAGAATATGGTGT---TGCAGAT 308529 | ||||||| |||| | ||||| || | ||| | ||||| || || ||| Sbjct 24127 TTAAAAGAATTCCTTGGAATTAAGAAAGTCGTTTGGTTGCCTTATGGAGTCTATGGTGAT 24186 Query 308530 GACGAAACAAATGGGCATGTTGATAACATGGCTTGTTTTTCACGACCCGGTGAAGTTATC 308589 || || || ||||| ||||||||||||||| | ||| | | ||| || ||| | Sbjct 24187 GATGACACCAATGGACATGTTGATAACATGTGTCAATTTACTCAACCTGGAACTGTTGTA 24246 Query 308590 CTGGCATGGACCGATGATCCTAAACATCCCCAATATGAACGTTC 308633 || ||||| |||||||| | | || || ||||||||||| Sbjct 24247 TTGCATTGGACAGATGATCCAAGGGACCCTCAGTATGAACGTTC 24290 >seq72 Length=85273 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/226 (71%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCA-TGAACGCTGAACTT 230469 ||||||||| ||||||| || | || ||| || || ||||| | ||||| || | Sbjct 75495 AAAGGAGTTTGTTTGTGAGTCTTTGCC-TGTTGCGTTGATTGGGAATGAACAGCGACATG 75437 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| ||||| || | || || | || ||||| | || || |||||| Sbjct 75436 ATGAGTCAGTACATTGAATTTGTTTCGGATCGTCTCTTGGTTGCCTTGGGATATGAGAAA 75377 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | | | |||| ||||| |||| | ||||||||||| || | |||| |||||| Sbjct 75376 TATTTCCATTCTAGAAACCCGTTTGATTGGATGGAGCTCATATCTTTGGAAGGAAAGACC 75317 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGTG 230634 ||||| || |||||||| || |||| || ||||| |||| ||| Sbjct 75316 AACTT-TTTGAAAAGCGAGTAGGTGAGTATTCAGAAAGCTGGAGTG 75272 >seq66 Length=178311 Score = 96.9 bits (106), Expect = 7e-15 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGG-CATGAACGCTGAAC 230467 ||||||||||| ||||||| || || | ||| || || ||||| |||||| || Sbjct 8519 GAAAAGGAGTTTGTTTGTGAGTCT-TTGCCTGTTGCGTTGATTGGAAATGAACAGCGACA 8577 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | |||||||| ||||| || | || || | || ||||| | || || |||| Sbjct 8578 TGATGAGTCAGTACATTGAATTTGTTTCGGATCGTCTCTTGGTTGCCTTGGGATATGAGA 8637 Query 230528 AAGT-GTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCAT-TTCGCTTCAAGGGAA 230585 || | | | | |||| ||||| |||| | ||||||||||| || | |||| || Sbjct 8638 AAATATTTCCATTCTAGAAACCCGTTTGATTGGATGGAGCTCATGGTCTTTGGAAGGAAA 8697 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||| || |||||||| || |||| ||||||| Sbjct 8698 GACCAACTT-TTTGAAAAGCGAGTAGGTGAGTATCAGA 8734 >seq86 Length=121679 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 76083 CTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGACCCCC 76027 >seq82 Length=95658 Score = 93.3 bits (102), Expect = 9e-14 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCA-TGAACGCTGAACTT 230469 ||||||||| ||||||| | || | ||| || || ||||| | ||||| || | Sbjct 94880 AAAGGAGTTTGTTTGTGAAGTCTTTGCCTGTTGCGTTGATTGGGAATGAACAGCGACATG 94939 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| ||||| || | || || | || ||||| | || || |||||| Sbjct 94940 ATGAGTCAGTACATTGAATTTGTTTCGGATCGTCTCTTGGTTGCCTTGGGATATGAGAAA 94999 Query 230530 G-TGTACAACTCTAAGAACCCCTTTGCATTT-ATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | | | | |||| ||||| ||| ||| ||||||||||| || | |||| |||| Sbjct 95000 TATTTCCCATTCTAGAAACCCGTTTTGATTGGATGGAGCTCATATCTTTGGAAGGAAAGA 95059 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGTG 230634 ||||||| || |||||||| || |||| || ||||| |||| ||| Sbjct 95060 CCAACTT-TTTGAAAAGCGAGTAGGTGAGTATTCAGAAAGCTGGAGTG 95106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822414255710