Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq72 145 8e-30 seq82 136 4e-27 seq66 118 1e-21 seq89 98.7 1e-15 >seq72 Length=85273 Score = 145 bits (160), Expect = 8e-30 Identities = 305/451 (68%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAAT-CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 ||| || |||||| |||| ||||||| || ||||| || || || || ||||| ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 |||||||| || ||||| |||| || || ||||||||||| | || || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC---- 17130 || || ||||| || || || | ||||| || | | ||||| || ||| || Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 17131 GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGT 17190 | || |||||||||| | |||| | |||||| | || || || || Sbjct 75798 GACT-------CAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCG 75850 Query 17191 TTCTATGGCCTTAAA-TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGA 17249 ||| || || | ||| ||| | |||||||| || ||||||| || ||||| | Sbjct 75851 TTCCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 75910 Query 17250 GTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 |||| ||| |||| || || || || ||||| |||||||||||||| || || |||| Sbjct 75911 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 75970 Query 17310 GGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGC 17369 | ||||| | |||||||| ||| || |||| ||| || ||||| || ||||| | Sbjct 75971 GTGCTTCAGGAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCAAAACGATAC 76029 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATG 17400 | || | || || || ||||||| ||| Sbjct 76030 CATCTGAGGAAGCAAAGAATGCCAATACATG 76060 >seq82 Length=95658 Score = 136 bits (150), Expect = 4e-27 Identities = 278/409 (68%), Gaps = 17/409 (4%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || |||||| || |||||||| || ||||| || || || || ||||| |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC-CCA 17074 ||||||| || ||||| |||| |||| ||||||||||| | || || || Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTCTTTTC---AACCAAAATATGGAACAAAAGGAATCCC 94641 Query 17075 GAAAAGAATATACCCTCGA-CGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC--- 17130 || || ||||| || || | | | ||||| || | | ||||| || ||| || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 17131 -GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCG 17189 | || |||||||||| | |||| | |||||| | || || || || Sbjct 94580 AGACTC-------AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTC 94528 Query 17190 TTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGA 17249 ||| || || | |||||| | |||||||| || ||||||| || ||||| | Sbjct 94527 GTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 94468 Query 17250 GTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATC 17309 |||| ||| |||| || || || || ||||| |||||||||||||| || || |||| Sbjct 94467 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 94408 Query 17310 GGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTC 17358 | ||||| | |||||||| ||| || |||| ||| || ||||| || Sbjct 94407 GTGCTTCAGGAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTC 94360 >seq66 Length=178311 Score = 118 bits (130), Expect = 1e-21 Identities = 279/417 (67%), Gaps = 32/417 (8%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTG------CTGATAAGTTCGTTAGA 17013 || |||||| ||||||||||| || ||||| || || | || || |||| || Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAG--CGTTGGA 8331 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAAC----- 17068 ||||||||| || ||||| |||| || || ||||||||||| | |||| Sbjct 8330 AAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATAT----GAGAACAAAAG 8275 Query 17069 GACCCAGAAAAGAATATACCCT-CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT 17127 || || || || ||||| |||| | || | ||||| || | | ||||| || ||| Sbjct 8274 GAACCCGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGA 8216 Query 17128 CGC----GTCTTTGTTACGAATCCATTTCT--GCACCCACTCGGCTTTTTGCTTTATGCA 17181 || | || ||||||||||| | |||| | |||||| | || || || Sbjct 8215 AGCAGAAGACTC-------AATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACA 8163 Query 17182 ATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGT 17241 || ||| || || | |||||| | |||||||| || ||||||| || Sbjct 8162 CGGAATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGT 8103 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 ||||| ||||| ||| |||| || || || || ||||| |||||||||||||| || Sbjct 8102 GTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATA 8043 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTC 17358 || ||||| ||||| | |||||||| ||| | |||| ||| || ||||| || Sbjct 8042 GAAACATCGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTC 7986 >seq89 Length=114172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 292/443 (66%), Gaps = 18/443 (4%) Strand=Plus/Plus Query 16936 TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTC- 16994 || ||||| |||| | || ||| || || || || || ||||| || || || |||| Sbjct 96938 TGGATGTTGAAGAAGACTATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCG 96997 Query 16995 TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAA 17054 || | || | || || ||||| |||| || |||||| || |||||||| ||||||| Sbjct 96998 TGAT-ATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAA 97056 Query 17055 ATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATC 17114 |||| | | || || |||||||||||||| || ||||| | |||||| || | | | Sbjct 97057 ATAT-GGAACAAAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGAC 97115 Query 17115 GTTCGGCGTACGTCGCGTCTTTGTTA-----CGAATCCATTTCTGCACCCACTCGGCTTT 17169 | ||||| | || || | |||||||||||| | ||| || || || Sbjct 97116 GCTCGGCAAA-------ACTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCTT 97168 Query 17170 TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT-TTCTCTTTT-TCCTGTAGG 17227 | || | ||| | |||| ||||| || | | | ||||| | | | Sbjct 97169 CT-TTTCACGCAGGGAAGGTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACACC 97227 Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || |||||||| || || || | |||||||| ||||||| || ||||| || Sbjct 97228 TCTCGAATATACGTGTCTATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCC 97287 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 | ||||| || ||||| || || ||||| | | ||| ||||| | ||| || | Sbjct 97288 AGTTGAAAGCCATAAAAACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCT 97347 Query 17348 GCTAGATTTTCGTTCACGATGCC 17370 || | ||||| ||||||||||| Sbjct 97348 GCCAAGTTTTCATTCACGATGCC 97370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544843089560