Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq72 172 6e-38 seq82 161 1e-34 seq66 149 6e-31 seq89 109 6e-19 >seq72 Length=85273 Score = 172 bits (190), Expect = 6e-38 Identities = 298/429 (69%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 || |||||||| | || || || || || || ||||||||||| || || |||||| Sbjct 75633 AATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGC 75692 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || |||| || || ||||| ||||| | | ||| || ||||| || ||||| || Sbjct 75693 ATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCT 75752 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG-AATCCA 16386 || || | |||||||| | | ||||| || ||| |||| | || |||||| Sbjct 75753 TCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAG----AAGACTCAATCCA 75808 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC-A 16445 |||| | |||||| |||||| | | ||||| || ||| || || | ||| | Sbjct 75809 TTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAAGTA 75868 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | | ||||||||| ||| ||||||| || || || |||| | ||| |||||| Sbjct 75869 AACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTG 75928 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 | || || || || || |||||||||||||||||||| ||||| || || | ||||| | Sbjct 75929 AATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAA 75988 Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 | ||| || ||||| ||| || || ||||| |||||||| || | |||||| | Sbjct 75989 CATCC-CGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGA 76047 Query 16626 ACGCCAATA 16634 | ||||||| Sbjct 76048 ATGCCAATA 76056 >seq82 Length=95658 Score = 161 bits (178), Expect = 1e-34 Identities = 303/438 (69%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || |||||||| | || || || || || || ||||||||||| || || Sbjct 94750 ACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAA 94691 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC-CCCGAAAAGA 16319 |||||||| |||| |||| ||||| ||||| | | ||| || ||||| || | Sbjct 94690 GCCTGGCATGAGACCTCTTTTC---AACCAAAATATGGAACAAAAGGAATCCCGAGAAAA 94634 Query 16320 ATATACCCTC-AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 |||| || || ||| | ||||| || | | ||||| || ||| |||| | | Sbjct 94633 ATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAG----AAGA 94578 Query 16379 CG-AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||||||| | |||||| |||||| | | ||||| || ||| || || Sbjct 94577 CTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 94518 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | ||| || | ||||||||| ||| ||||||| || || || |||| | || Sbjct 94517 TTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATA 94458 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 | ||||||| || || || || || |||||||||||||||||||| ||||| || || | Sbjct 94457 CGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGG 94398 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT-CATTCACGATACCGTCACTTG 16616 ||||| || ||| || ||||| ||| || || |||| | |||||||| || | Sbjct 94397 AATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGG 94339 Query 16617 CAGCAAAAAACGCCAATA 16634 |||||| || ||||||| Sbjct 94338 AAGCAAAGAATGCCAATA 94321 >seq66 Length=178311 Score = 149 bits (164), Expect = 6e-31 Identities = 277/398 (70%), Gaps = 13/398 (3%) Strand=Plus/Minus Query 16245 CGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAA 16304 |||||||||| || || |||||||| |||| || || ||||| ||||| | ||| Sbjct 8337 CGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAA 8278 Query 16305 ATG-ACCCCGAAAAGAATATACCCT-CAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362 | | | ||||| || ||||| |||| |||| | ||||| || | | ||||| || | Sbjct 8277 AAGGAACCCGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAA 8219 Query 16363 CGTAGCATCTTTATTACG-AATCCATTTCT--GTACCCATTCGGCTTTTTGTTTTATACA 16419 || |||| | || ||||||||||| | |||||| |||||| | | ||||| Sbjct 8218 CGAAGCAG----AAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACA 8163 Query 16420 ATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 || ||| || || | ||| || | ||||||||| ||| ||||||| || Sbjct 8162 CGGAATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGT 8103 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 || || |||| | ||| ||||||| || || || || || ||||||||||||||||| Sbjct 8102 GTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATA 8043 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATT 16599 ||| ||||| || || | ||||| || ||| |||||| ||| || || ||||| Sbjct 8042 GAAACATCGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAA 7983 Query 16600 CACGATACCGT-CACT--TGCAGCAAAAAACGCCAATA 16634 |||||||| | | || | |||||| || ||||||| Sbjct 7982 AACGATACCATACTCTGAGGAAGCAAAGAATGCCAATA 7945 >seq89 Length=114172 Score = 109 bits (120), Expect = 6e-19 Identities = 390/597 (65%), Gaps = 17/597 (3%) Strand=Plus/Plus Query 16191 TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTG 16249 || ||| || || || || || ||||| | ||||| |||| || | || | || ||| Sbjct 96955 TATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGAT-ATCAACTCATTG 97013 Query 16250 GAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC 16309 ||||| || | || ||||| || |||||||| ||||| ||||| | | |||| || Sbjct 97014 GAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAA 97072 Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369 || ||||||||||| || || || | ||||||||| | | || || || | || | Sbjct 97073 CCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGA 97132 Query 16370 TCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT 16429 | |||||||||||| ||| || || || | ||| | || | || Sbjct 97133 GAACACT--CGAATCCATTTCAACGACCAATCCGCCTTCT-TTTCACGCAGGGAAGGTTT 97189 Query 16430 TCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATA----TCGATTATATACGTATCAAT 16485 || ||||| |||| | ||||| | | | |||| |||||||| || || Sbjct 97190 TCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACACCTCTCGA--ATATACGTGTCTAT 97247 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 ||| || |||||||| ||||||| || || || || | ||||| ||||| || || Sbjct 97248 CAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACA 97307 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 || || || | | ||||||||| | || || | |||| ||| ||||||||||| Sbjct 97308 ACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGAT 97367 Query 16606 ACCGT--CACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG-A 16662 || | | |||||||| || ||||| | ||| ||||| | | ||| || Sbjct 97368 GCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCC 97427 Query 16663 TGTA-AGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 || | |||| | |||||| || |||| || | || |||||||| ||||| | Sbjct 97428 TGAAGCGAAT-TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGA 97486 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | ||||| |||| ||| |||| || ||| || | | ||| ||| ||||||| Sbjct 97487 AACTAGCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATA 97543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413652056440