Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq72 183 4e-41 seq82 161 1e-34 seq66 147 3e-30 seq89 132 6e-26 >seq72 Length=85273 Score = 183 bits (202), Expect = 4e-41 Identities = 370/542 (68%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||| ||||||||| |||| |||| || | |||||| || || ||| | ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | || ||||| || || | |||||| | |||||||||||| ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || ||||||||||| || ||||| || | || | ||| | || || || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGC--AAACGAAGCAG 75795 Query 24306 -----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| | Sbjct 75796 AAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 75852 Query 24361 CTATAGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 | || || | |||| | | ||||| | | |||| | | |||||| || || | Sbjct 75853 CCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 75912 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 ||| |||| |||| ||||| || ||||| || || || |||||||| |||||||||| Sbjct 75913 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 75972 Query 24480 GCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 || || | ||| || || || || ||||| |||||| | ||| || || || || Sbjct 75973 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCA 76031 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 76032 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 76091 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATC-CACTTCTTCCACTGTCCAAAATGATGC 24658 || |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76092 TTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 Query 24659 CT 24660 || Sbjct 76152 CT 76153 >seq82 Length=95658 Score = 161 bits (178), Expect = 1e-34 Identities = 367/543 (68%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||||||||| || ||||| || | |||||| || || ||| | |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCA 24245 | || | || ||||| || || | |||| | |||||||||||| ||| | |||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 24246 GAAAAGAAAATTCCTTCT-ACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 || || || ||||||||| || || ||||| || | || | ||| | || || || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGC--AAACGAAGCA 94583 Query 24305 G-----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 | ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| Sbjct 94582 GAAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || || || | ||| | | ||||| | | |||| | | |||||| || || | Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 ||| |||| |||| ||||| || ||||| || || || |||||||| |||||||||| Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 24480 GCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATT-TTCATTCACTATTCC 24538 || || | ||| || || || || ||||| |||||| | ||| | | || || || Sbjct 94405 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 24539 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 24598 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 24599 TTTATTCCAATCATTGATATC-TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 || |||||||| | | ||| || | || | |||||| | ||||||||||| | Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAG 94227 Query 24658 CCT 24660 ||| Sbjct 94226 CCT 94224 >seq66 Length=178311 Score = 147 bits (162), Expect = 3e-30 Identities = 368/547 (67%), Gaps = 23/547 (4%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA--ATT--CGTTGGAAA 24186 ||||||||| |||||||| || | |||||| || || | | || ||||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GACGCAAATGATCCA 24245 | || | || ||||| || || | |||||| | |||||||||| || ||| || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 24246 GAAAAGAAAATTCC-TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 || || || ||||| ||| || || |||||| | | || | ||| || | || || Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAA--CGAAGCA 8212 Query 24305 G-----TCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 | ||| ||||| || | ||||||| | ||| ||||| | | ||| || ||| Sbjct 8211 GAAGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTC 8155 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 || || || | ||| | | ||||| | | |||| | | |||||| || || | Sbjct 8154 GTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 8095 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 ||| |||| |||| ||||| || ||||| || || || |||||||| |||||||||| Sbjct 8094 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 8035 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 || || | ||| || || || |||||||| |||||| | ||| || || || | Sbjct 8034 GTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATAC 7975 Query 24538 CGT-CACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | | | ||| | ||||| || ||||||||||| ||||| | ||| |||| | Sbjct 7974 CATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAG 7915 Query 24595 TTAG-TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | | ||| ||||| || | | ||| || | || | |||||| | ||||||||| Sbjct 7914 TCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAAT 7855 Query 24654 GATGCCT 24660 || |||| Sbjct 7854 GAAGCCT 7848 >seq89 Length=114172 Score = 132 bits (146), Expect = 6e-26 Identities = 367/555 (66%), Gaps = 16/555 (3%) Strand=Plus/Plus Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230 || || || |||||||| || ||||| ||||| | || || || || | |||||||||| Sbjct 97002 ATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATG 97061 Query 24231 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCT 24290 || |||| || ||||||||||| || ||||| || || ||||| |||| || | || Sbjct 97062 GA-ACAAAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCG 97120 Query 24291 CCATAAC-CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 24349 || ||| | | | | ||||| || | |||||| |||||| |||| || || Sbjct 97121 GCAAAACTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCTTC-TTTTCACGCA 97179 Query 24350 AGGCATTGTCTCTATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATA 24406 || | | || || ||| || | || |||| ||| || ||| || ||| Sbjct 97180 GGGAAGGTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATATA 97238 Query 24407 TGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 24466 || || |||| | |||||||||||| || | ||||| || |||| |||||| || Sbjct 97239 CGTGTCTATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCC 97298 Query 24467 GTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTC 24526 || ||||| | || |||| | |||||||| | | || || |||| || ||||| Sbjct 97299 ATAAAAACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTC 97358 Query 24527 ATTCACTATTCCGTCACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 |||||| || || | | | || ||||| || ||||| || || ||| || | | | Sbjct 97359 ATTCACGATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGT 97418 Query 24585 TC----GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 || | ||| | | | | |||||| | |||| ||| | || |||||||| Sbjct 97419 TCTGAAGCCTGAAGCGAAT---TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTC 97475 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 |||||||| || || ||||| ||| |||| | |||||| | |||| || Sbjct 97476 GACTGTCCAGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTAT 97535 Query 24701 TGGAAAAATAACAAA 24715 ||||| | |||||| Sbjct 97536 AGGAAATAGAACAAA 97550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720731682160