Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq89 131 2e-25 seq72 109 6e-19 >seq89 Length=114172 Score = 131 bits (144), Expect = 2e-25 Identities = 371/557 (67%), Gaps = 25/557 (4%) Strand=Plus/Minus Query 116646 TGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA 116705 |||||||| || || || |||||||| ||||| || || ||| |||| | ||| Sbjct 97510 TGTACAAACGTGCAGAAGCTAGTTTCTGGACAGTCGAAGAAGTCGACTTGTCTCAAGACT 97451 Query 116706 CGAGCGACTGGGAG--CGCTTGAA-CGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | | || ||||| ||||| | | || || | || ||||| ||||| ||| Sbjct 97450 TGCGGGATTGGGAATTCGCTTCAGGCTTCA--GAACAGCACTTCATATCCCACGTTTTGG 97393 Query 116763 CCTTTTTCGCCGC--CAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTC 116819 | || || || || | | | |||||||| || || || ||| | |||||| || | Sbjct 97392 CTTTCTTTGCTGCTTCGGGTATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTCAGCAC 97333 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 | || | || || |||| ||||| || || || |||||||| | || ||||| || | Sbjct 97332 CGAAG-TACAAGTCCCCGAAGCGCGTTGTTTTTATGGCTTTCAACTGGCGATGGAAAATG 97274 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTA----CGTGCGCTCTTCGGAGGAG 116935 | ||||||||||||||| || || || |||||||| || | | | | || || Sbjct 97273 TACACTCGGAAATGTATGCGTTGCTGATAGACACGTATATTCGAGAGGTGT--CGAAGAA 97216 Query 116936 AAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGG 116995 |||| || |||| ||||| || | | || ||||| ||| ||||||| || ||| Sbjct 97215 AAGCGTCGACTGTTCTTTGCCATTGAAAACCTTCCCTGCGTGAAA-AGAAGGCGGATTGG 97157 Query 116996 GCGCTGCGCTGGA-TCGCCGG--CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 || || |||| ||| | | | || || | |||||| ||||| || || Sbjct 97156 TCGTTGAAATGGATTCGAGTGTTCTCATAG-----TTTTGCCGAGCGTCTGGTTGCTTTT 97102 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || ||||| || | |||||||| || ||| | ||||||||||| | |||||| Sbjct 97101 GCAGCGGTCGAAGGGATATTCTTTTCTGGTTCTTTTG-TTCCATATTTTGGTTGAAGAAA 97043 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || || | ||||| || ||||| || ||| ||| | || || | || || || || Sbjct 97042 CGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCACGAGATGAAGGCTTG 96983 Query 117173 CATTGCGACTTTGCCTG 117189 ||||| || ||||| || Sbjct 96982 CATTGTGAATTTGCTTG 96966 >seq72 Length=85273 Score = 109 bits (120), Expect = 6e-19 Identities = 312/471 (66%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 || ||||| || ||| || || |||| || || || || || || ||||| Sbjct 76078 GAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCGTTTTG 76019 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 |||||||| | || | || | || ||| || || | | || || || || ||||| Sbjct 76018 GAGAATCTTGCAGAAAGATTTG-TCGGGATGTTCAAATTCCTGAAGCACGATGTTTCTAT 75960 Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACG 116914 || |||||||| || ||||| || | || || |||| |||||| || |||||||| Sbjct 75959 GGATTTCAGATAGCAATGGAAAATATCCATTCAGAAACGTATTCTCTACTTATCGACACA 75900 Query 116915 TACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG--TTGAACGCCATCGAGACGA-TGCCG 116971 || | | | | |||| ||| ||||| ||||| || || || |||| | ||| Sbjct 75899 TATATAAGAGATGCTCAGGAAAAGGCTCGTTTACTTTGAA-GCAATGGA-ACGAATTCCG 75842 Query 116972 TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTC 117031 || | | |||| ||| | ||||| ||| ||||| | || | |||| Sbjct 75841 TGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTG-------AGTCTTCTGCTTC 75789 Query 117032 G---GC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 | || || || ||||| || || || || || || || | || || ||||| || Sbjct 75788 GTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCCTT 75729 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||||||||||| | || || | || |||||||| ||| |||| || |||||| Sbjct 75728 TTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAACGA 75669 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCG-ACTTTGCCTGTTTGCTGT 117197 ||| || || ||||| |||||| ||||||||| | ||||| |||||| ||| Sbjct 75668 GCTGATTTCAAGGGATGAGGGTTTGCATTGCGAATTTTGCATGTTTGTTGT 75618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218446491920