Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq103 131 3e-25 seq77 89.7 8e-13 >seq103 Length=203287 Score = 131 bits (144), Expect = 3e-25 Identities = 175/242 (72%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTA-------TAACTATAGAGATTGA 124591 |||||||||||| | || || | ||||| || || | |||| ||||| | || Sbjct 14396 ATGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCGA 14337 Query 124592 AGCAAATGATACAATTTCTAATTTAAAA-CAGAAAATTCAAGATAAAGAAGGTATACCAC 124650 | | ||||| || ||| | ||| || | | |||||||||||||||||||||| | Sbjct 14336 ACCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCCC 14277 Query 124651 CTGATCAACAAAGGCTTATTTTTGCAGGAAAA--CAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||||||||| ||||| || ||| ||| | || || | |||| | Sbjct 14276 CTGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGTC 14217 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||||| ||||| || ||||| ||||| || | ||| | || ||||| Sbjct 14216 GGACTATAATATTCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGGTAT 14157 Query 124769 TA 124770 || Sbjct 14156 TA 14155 >seq77 Length=161124 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| ||||||| || || || || || || ||| | || | || | Sbjct 114752 AATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTC 114693 Query 124598 TGATACAATTTCTAA--TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| || | | || ||| || ||||| || |||||||| || || || Sbjct 114692 AGATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGAC 114633 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGA--GGATAGTCGAACATTAGAAGATT 124713 || ||| | | ||||||||||| ||||| || || | || |||| || | | ||| | Sbjct 114632 CAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCACTCTCG-AGACT 114574 Query 124714 ATAATA-TTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAA 124771 | || | ||||||| || || ||| | || ||||| |||||| || | ||||| || || Sbjct 114573 ACAACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACGTCTAAGGGGTGGAATGCAA 114514 Query 124772 AAATTC 124777 | |||| Sbjct 114513 ATATTC 114508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454895145600