Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq36 104 3e-17 seq103 91.5 2e-13 seq58 91.5 2e-13 >seq36 Length=139094 Score = 104 bits (114), Expect = 3e-17 Identities = 101/125 (81%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||| || | ||||| || ||| || |||||||| ||||||||||| | | ||| Sbjct 92210 AATACCAAGTGAAGGGTAGACTCCTTTTGA-ATATTATAGTCTGAAAGAGTACGACCATC 92268 Query 146125 ATCTAA-TTGTTTTCCAGCAAAAATC-AATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 ||||| ||| ||||||||||| ||| || | |||||| || |||||||||||||| || Sbjct 92269 TTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTG 92328 Query 146183 TCTTG 146187 ||||| Sbjct 92329 TCTTG 92333 >seq103 Length=203287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 || |||||||| || || || ||||| ||| || |||||||| || || |||||||| | Sbjct 14172 CTCAATACCAAGTGCAACGTGGATTCCTTTTGA-ATATTATAGTCCGACAGAGTTCTTCC 14230 Query 146122 ATCATCTAATTG--TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179 || || | ||| ||| |||||||| || | ||||| ||||| || || || |||||| Sbjct 14231 GTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGGGTATACCTTCT 14290 Query 146180 TTATCTTG 146187 |||||||| Sbjct 14291 TTATCTTG 14298 >seq58 Length=124683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 5/125 (4%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA----- 146122 |||||| || || |||||||| || ||||||||| || || |||||||| ||| Sbjct 62591 TACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGC 62650 Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 || || ||||| || || ||||| ||||| | || ||||| ||||||||||| || || Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 146183 TCTTG 146187 ||||| Sbjct 62711 TCTTG 62715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525312592640