Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq89 165 8e-36 seq72 165 8e-36 seq82 159 3e-34 seq66 152 5e-32 >seq89 Length=114172 Score = 165 bits (182), Expect = 8e-36 Identities = 287/412 (70%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| ||||||||||| ||||| || | ||| ||||| || ||||| || || Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | || ||||| || | ||||||||| | |||| ||||||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATAT-GGAACAAAAGAACCAGAAAAGAAT 97084 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc- 16413 || ||||| || || ||||| ||||||| ||||| | | |||| || || Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAA---ACTATGAGAACACTCG 97141 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| | ||||| || || | ||| || ||| | ||| || || ||| Sbjct 97142 AATCCATTTCAACGACCAATCCGCCTTCT-TTTCACGCAGGGAAGGTTTTCAATGGCAAA 97200 Query 16474 AAATAAATAAtttttttCTTTGCTA--TCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || | | ||||||| | | ||| |||||| || ||||| || || |||| Sbjct 97201 GAACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCATAC 97260 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 ||||| || || | ||| ||||| || | ||||| |||||||| || | ||||||| Sbjct 97261 ATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGG 97320 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 | ||||||||| | | || | |||| |||||||| || || || |||| Sbjct 97321 ACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCAT 97372 >seq72 Length=85273 Score = 165 bits (182), Expect = 8e-36 Identities = 288/413 (70%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 16234 ACAAGCAAAAT-CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAA 16292 ||| ||||||| | |||||||| || || ||||| || | |||||| |||||||| | Sbjct 75625 ACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCA 75684 Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352 |||||||| || |||| ||||| | ||||||||| | ||| ||||| || || | Sbjct 75685 AGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAA 75744 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412 |||| ||||| || || ||||| || |||| || ||| | ||| | ||| Sbjct 75745 ATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAAG-ACT-- 75801 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 | |||||||| |||||| || ||||| | | || ||| || || ||||| | Sbjct 75802 CAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTT 75861 Query 16473 TAAA-TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||| |||| | ||||| | |||| ||||| || || || |||| | |||| Sbjct 75862 CAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATAC 75921 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 |||||||||| ||||| ||||||||||||||||| ||||| || |||| ||||| | Sbjct 75922 GTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGA 75981 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||||| || || | ||| |||||||| | || || ||| || ||||| Sbjct 75982 ATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATC 76033 >seq82 Length=95658 Score = 159 bits (176), Expect = 3e-34 Identities = 273/389 (70%), Gaps = 9/389 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||| || |||||||| || || ||||| || | |||||| |||||||| | Sbjct 94750 ACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAA 94691 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA-CCAGAAAAGA 16352 |||||||| || |||| |||| | ||||||||| | ||| ||| || || || | Sbjct 94690 GCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAAAA 94634 Query 16353 ATATACCTTC-AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 |||| ||||| ||| || |||||||| |||| || ||| | ||| | ||| Sbjct 94633 ATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAAG-ACT- 94576 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 | |||||||| |||||| || ||||| | | || ||| || || ||||| Sbjct 94575 -CAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCT 94517 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 | ||||||| | ||||| | |||| ||||| || || || |||| | |||| Sbjct 94516 TCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATAC 94457 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 |||||||||| ||||| ||||||||||||||||| ||||| || |||| ||||| | Sbjct 94456 GTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGA 94397 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGC 16620 ||||| || || | ||| |||||||| Sbjct 94396 ATTTGAACATC-CCGACAAATCTTTCTGC 94369 >seq66 Length=178311 Score = 152 bits (168), Expect = 5e-32 Identities = 366/543 (67%), Gaps = 22/543 (4%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT----CGTTTGAAAATG 16289 ||| |||||||| |||||||| || || ||||| | | | |||| ||||||| Sbjct 8385 ACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAATG 8326 Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT-AGCGGCAAATGAACCAGAA 16348 | | |||||||| || |||| ||||| | ||||||||| || ||| ||||| || Sbjct 8325 TCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCGAG 8266 Query 16349 AAGAATATACC-TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttt 16407 || ||||| || |||||| || ||||| || |||| || ||| | ||| | Sbjct 8265 AAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAAG- 8208 Query 16408 actttctatccattttttag--cccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 ||| | |||||||| | || |||| || ||||| | | || ||| || || Sbjct 8207 ACT--CAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 8150 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 ||||| | ||||||| | ||||| | |||| ||||| || || || |||| | Sbjct 8149 ATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGA 8090 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 |||| |||||||||| ||||| ||||||||||||||||| ||||| || |||| ||| Sbjct 8089 GAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCT 8030 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT-C 16644 || | ||||| || || |||| |||||||| | || || ||| || |||| | Sbjct 8029 TCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATAC 7970 Query 16645 GCT--AGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG----A 16698 || | ||||| || || | || || ||||| | ||| ||||| Sbjct 7969 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTC---ATCTGCAGTC 7913 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || |||| |||||| ||||| ||| || |||| ||||| |||||||||| || Sbjct 7912 AACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGA 7853 Query 16759 AGC 16761 ||| Sbjct 7852 AGC 7850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511323576200