Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq72 187 2e-42 seq82 179 4e-40 seq66 168 6e-37 seq89 131 2e-25 >seq72 Length=85273 Score = 187 bits (206), Expect = 2e-42 Identities = 307/438 (70%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 14201 AAACACGCAAAAT-CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 ||||| ||||||| | ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 || |||||||| | |||| ||||| ||||||||||| | | || || || || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 |||||||| || || |||||||| |||| | ||||| ||||||| || Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGC---AGAAGA 75799 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||||| |||||||| | ||| || | |||| | ||| ||| || || Sbjct 75800 CTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 75859 Query 14440 ATTAAA-TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | ||| |||| | |||| || | || | | || ||||| || ||||||| || Sbjct 75860 TTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 75919 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 || |||| || || || |||||||| ||||||||||| ||||| ||||||| ||||| | Sbjct 75920 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 75979 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 ||| || || | ||||||||| || | ||| || ||| |||||||| | Sbjct 75980 GAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGG 76038 Query 14619 CTGCAAAAAATGCCAATA 14636 ||||| |||||||||| Sbjct 76039 AAGCAAAGAATGCCAATA 76056 >seq82 Length=95658 Score = 179 bits (198), Expect = 4e-40 Identities = 365/531 (69%), Gaps = 17/531 (3%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||| || ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA-TCCGGAAAA 14319 || |||||||| | |||| |||| ||||||||||| | | || || ||| || || Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAA 94636 Query 14320 GAATATTCCCTC-AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 |||||||| || ||| |||||||| |||| | ||||| ||||||| || | Sbjct 94635 AAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAAGACT 94576 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 |||||||| |||||||| | ||| || | |||| | ||| ||| || | Sbjct 94575 CA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTG 94519 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | | ||||||| | |||| || | || | | || ||||| || ||||||| || Sbjct 94518 CTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 94459 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 || |||| || || || |||||||| ||||||||||| ||||| ||||||| ||||| | Sbjct 94458 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 94399 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATT-TTCATTAACTATACCATCACTA 14617 ||| || || | ||||||||| || | ||| | | ||| |||||||| Sbjct 94398 GAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAG 94340 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TGAGTTTTT 14675 | ||||| |||||||||| | ||||||| | || || ||| | | |||| Sbjct 94339 GAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATC--TGCAGTCAACTTTT 94282 Query 14676 TCCAATCGGCTAAATC--CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 ||||||| | ||||| | | || | || | ||| ||| | |||||||| Sbjct 94281 TCCAATCTTCCAAATCAGCCT-GACAAGTCGATTTCTTCAGCAGTCCAAAA 94232 >seq66 Length=178311 Score = 168 bits (186), Expect = 6e-37 Identities = 367/538 (68%), Gaps = 20/538 (4%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCT----ACTAATAAGTTCGTTTGAAAA 14256 ||||| |||||||| ||||| | |||||||| || | | | | |||| ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT-TGCAGCGAATGATCCGG 14315 ||| || |||||||| | |||| ||||| ||||||||||| | | || || || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 14316 AAAAGAATATTCCC-TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 | || ||||||||| ||||| |||||||| |||| | ||||| ||||||| || Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGC---A 8212 Query 14375 TTGTTCGATATCCATTT-TC-TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14432 | |||||||| || |||||||| | ||| || | |||| | ||| || Sbjct 8211 GAAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 8152 Query 14433 CAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14492 | || || | ||||||| | |||| || | || | | || ||||| || ||||||| Sbjct 8151 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 8092 Query 14493 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG 14552 |||| |||| || || || |||||||| ||||||||||| ||||| ||||||| | Sbjct 8091 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 8032 Query 14553 CTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 |||| | ||| || || |||||||||| || | ||| || ||| ||||||| Sbjct 8031 CTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 7972 Query 14613 -CACT--AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG- 14668 | || | ||||| |||||||||| | ||||||| | || || ||| | Sbjct 7971 ACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATC--TGCAGT 7914 Query 14669 --AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | ||||||||| || | ||||| || | || | ||| ||| | |||||||| Sbjct 7913 CAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 >seq89 Length=114172 Score = 131 bits (144), Expect = 2e-25 Identities = 390/591 (66%), Gaps = 13/591 (2%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||||||| | ||| ||||||| || | || || ||||| || | | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || |||||||| || ||||| || |||||||||| || | | || || || ||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATA-TGGAACAAAAGAACCAGAAAAGAAT 97084 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC-TCCAAACGATGCTTTTTTGTTCGA 14382 || || || || || ||||| || | | || || | |||| ||| |||| Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATG--AGAACACTCGA 97142 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||||| | ||| || | || |||| | | | ||||||| ||| Sbjct 97143 -ATCCATTTCAACGACCAATCCG-CCTTCTTTTCACGCAGGGAAGGTTTTCAATGGCAAA 97200 Query 14443 AAATAAATGTTCCTTCTCTTTAGTAC--TTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | ||| |||| || | ||| || || || || || || |||| Sbjct 97201 GAACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCATAC 97260 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 ||||| ||||||| |||||||| || | ||||| ||||||||||| | ||||| | Sbjct 97261 ATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGG 97320 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT--CACTAG 14618 |||||| || | | || | | ||||| |||||||| || || |||| | || Sbjct 97321 ACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAG 97380 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA--GTTTTTT 14676 | ||||| || ||||| | || || |||| || || | | |||| || Sbjct 97381 CAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTC-TGAAGCCTGAAGCGAATTC 97439 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 |||||| || || | ||| | || ||||| || |||||||| |||||||| | || Sbjct 97440 CCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTTCTGC 97499 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||| |||| | |||| |||| | ||||| ||||||||| | ||||| Sbjct 97500 ACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAACAAA 97550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344894569560