Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq89 196 4e-45 seq74 113 4e-20 seq77 87.8 2e-12 >seq89 Length=114172 Score = 196 bits (216), Expect = 4e-45 Identities = 419/610 (69%), Gaps = 17/610 (3%) Strand=Plus/Minus Query 57532 CCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGG 57591 || || | ||||| | ||||| || |||| | | || ||| | |||||||| | Sbjct 97558 CCAGTCGTTTTGTTCTATTTCCTATAAGATATAGACAAATCTGGGAATTGTACAAACGTG 97499 Query 57592 CAGAAGCATCGTTT-TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 ||||||| | |||| ||||| ||||||||||| ||| ||||| | || || | |||||| Sbjct 97498 CAGAAGC-TAGTTTCTGGACAGTCGAAGAAGTCGACTTGTCTCAAGACTTGCGGGATTGG 97440 Query 57651 G-ATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGC 57709 | |||| || | | || || | || || ||||| ||||| || || || || Sbjct 97439 GAATTCGCTTCAGGCTTCAGAACAGCACTTCATATCCCACGTTTTGGCTTTCTTTGCTGC 97380 Query 57710 ATCCG--ATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CA-AGAAGTGCAAG 57765 || | |||| || || || || || |||| | | ||||| || ||||| |||| Sbjct 97379 TTCGGGTATGGCATCGTGAATGAAAACTTGGCAGCTCG--TTTCAGCACCGAAGTACAAG 97322 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | | || ||| | || ||||| || |||||| |||| || ||||| || || || |||| Sbjct 97321 TCCCCGAAGCGCGTTGTTTTTATGGCTTTCAACTGGCGATGGAAAATGTACACTCGGAAA 97262 Query 57826 TGTATTCGCTACTCATCGATACGTACGT--GAAGGACAACGACGAGAAACGTAGACTGTT 57883 ||||| || | || || || ||||| | || | ||| || || ||| ||||||| Sbjct 97261 TGTATGCGTTGCTGATAGACACGTATATTCGAGAGGTGTCGAAGAAAAGCGTCGACTGTT 97202 Query 57884 CAACGCGATCG-AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 | || || | |||| | || ||| | |||||||| || ||||| | ||||||| Sbjct 97201 CTTTGCCATTGAAAACCTTCCCTGCG--TGAAAAGAAGGCGGATTGGTCGTTGAAATGGA 97144 Query 57943 TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTA 58002 | || | | | || |||||| | || | || || || || |||||||| | Sbjct 97143 T-TCGAGTG-TTCTCATAGTTTTGCCGAGCGTCTGGTTGCTTTTGCAGCGGTCGAAGGGA 97086 Query 58003 TATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCG 58062 |||||||||| || |||| | ||||||||| |||||||||| || ||||||| | Sbjct 97085 TATTCTTTTCTGG-TTCTTTTGTTCCATATTTTGGTTGAAGAAACGGGGGTTGATGCCTG 97027 Query 58063 GCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGT 58122 | ||||| ||| ||| ||||||||||| || || || || | ||| ||| ||||| | Sbjct 97026 GACTGACCTTTTCCAATGAGTTGATATCACGAGATGAAGGCTTGCATTGTGAATTTGCTT 96967 Query 58123 GCCTAATGTA 58132 |||| |||| Sbjct 96966 GCCTTTTGTA 96957 >seq74 Length=163707 Score = 113 bits (124), Expect = 4e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171 || ||||| | || || | ||| || || || || | ||||||||| || || ||| Sbjct 150182 ACCGTAAATTTGATAGCTTCTGCTGCAGGCCGCGTACGCAAATAATACATTCCTGTTTTC 150241 Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCC 22231 | || || ||||| | | |||||| ||||| | | |||||| | ||||| | | Sbjct 150242 AACCCAATTTTCCAACCATGAAAATGCATCGAACTTAGTTTTCCGATATTCGGCGATGCG 150301 Query 22232 ATGTACACATTGAACGAC--TGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATAT 22289 ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| Sbjct 150302 ATGTACACATTGA--GACTTTGACTCTGATCGATAAACGCTCCTCTATCCGCGGCCATAT 150359 Query 22290 TTA 22292 || Sbjct 150360 CTA 150362 >seq77 Length=161124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/236 (70%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || || || || || || | || || || || || Sbjct 114751 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTCA 114692 Query 31253 GACAGTGTCGAAACG--GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | | || | | ||||| || ||| ||||||||||| | || || |||| Sbjct 114691 GATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114632 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-----ACTATGAGCGA 31365 |||| ||| | || || || || ||||||||||||| |||| ||| | | || Sbjct 114631 AGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAG---GTATGGTCGCACTCT-CGAGA 114576 Query 31366 TTATAACA-TTCAAAAAGAATCGACTCTTCATCTGGTACTTA-GACTGAGGGGCGG 31419 || |||| ||||||| || || ||||| || |||| |||| | || ||||| || Sbjct 114575 CTACAACATTTCAAAAGGAGTCTACTCTCCACTTGGT-CTTACGTCTAAGGGGTGG 114521 Score = 86.0 bits (94), Expect = 6e-12 Identities = 166/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGA-TCACCG-TCGACGTTGAACCGT 31250 ||||| || |||||||||||||| || || || || | ||| | | || || || || | Sbjct 114059 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 114000 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| | | ||| | ||||| || ||| ||||||||||| | || || |||| Sbjct 113999 CAGACACTATTGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 113940 Query 31311 AGCAGCGTCTAATATT--CGC-TGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| ||| | || || || ||| |||||||||||||| | ||| | || | Sbjct 113939 AGCAACGTTTGATTTTGCAGCTTGGGAAACAGTTGGAAGATGGTCGTACTCTCTCAGACT 113880 Query 31368 ATAACA--TTCAAAAAGAATCGACTCTTCATCTGGTACTTA-GACTGAGGGGCGG 31419 | |||| ||| ||| || || |||||||| |||| |||| | |||||||| || Sbjct 113879 ACAACAGCTTC-AAAGGAGTCTACTCTTCACTTGGT-CTTACGTCTGAGGGGTGG 113827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765748066640