Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq72 192 7e-44 seq82 170 2e-37 seq66 156 5e-33 seq74 141 1e-28 seq89 134 2e-26 >seq72 Length=85273 Score = 192 bits (212), Expect = 7e-44 Identities = 372/542 (69%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 ||| ||||||||| |||| |||| |||| |||||| || || ||| | ||||| ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | || ||||| || || | |||||| | ||||||||||||| || || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || || || ||||||||||| |||||||| || | || | || || | || || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAA--CGAAGCAG 75795 Query 33753 -----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 ||| ||||| || ||||||| | ||| ||||| | | ||| || || || Sbjct 75796 AAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 75852 Query 33808 CTATGGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 | || || | |||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 75853 CCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 75912 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 75913 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 75972 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 || || | ||| || || || || ||||| |||||| | ||| || || || ||| Sbjct 75973 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCA 76031 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 34046 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 76032 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 76091 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATC-CACTTCTTCCACTGTCCAAAATGATGC 34105 || |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76092 TTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 Query 34106 CT 34107 || Sbjct 76152 CT 76153 >seq82 Length=95658 Score = 170 bits (188), Expect = 2e-37 Identities = 369/543 (68%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||||||||| || ||||| |||| |||||| || || ||| | ||||| |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA-TCCG 33692 | || | || ||||| || || | |||| | ||||||||||||| || || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 33693 GAAAAGAAGATTCCTTCTA-CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 || || || |||||||||| | |||||||| || | || | || || | || || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAA--CGAAGCA 94583 Query 33752 G-----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | ||| ||||| || ||||||| | ||| ||||| | | ||| || || | Sbjct 94582 GAAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || || | ||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATT-TTCATTCACTATTCC 33985 || || | ||| || || || || ||||| |||||| | ||| | | || || || Sbjct 94405 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 ||| || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 34046 TTTATTCCAATCATTGATATC-TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 || |||||||| | | ||| || | || | |||||| | ||||||||||| | Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAG 94227 Query 34105 CCT 34107 ||| Sbjct 94226 CCT 94224 >seq66 Length=178311 Score = 156 bits (172), Expect = 5e-33 Identities = 370/547 (68%), Gaps = 23/547 (4%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA--ATT--CGTTAGAAA 33633 ||||||||| |||||||| |||| |||||| || || | | || |||| |||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GAAGCGAATGATCCG 33692 | || | || ||||| || || | |||||| | |||||||||| ||| || || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 33693 GAAAAGAAGATTCC-TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 || || || ||||| ||| || ||||||||| | | || | || || | || || Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAA--CGAAGCA 8212 Query 33752 G-----TCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 | ||| ||||| || | ||||||| | ||| ||||| | | ||| || || Sbjct 8211 GAAGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTC 8155 Query 33805 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33864 ||| || || | ||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 8154 GTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 8095 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 8094 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 8035 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 || || | ||| || || || |||||||| |||||| | ||| || || || | Sbjct 8034 GTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATAC 7975 Query 33985 CAT-CACT--GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 34041 ||| | || || ||||| || ||||||||||| ||||| | ||| |||| | Sbjct 7974 CATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAG 7915 Query 34042 T-TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | | ||| ||||| || | | ||| || | || | |||||| | ||||||||| Sbjct 7914 TCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAAT 7855 Query 34101 GATGCCT 34107 || |||| Sbjct 7854 GAAGCCT 7848 >seq74 Length=163707 Score = 141 bits (156), Expect = 1e-28 Identities = 476/728 (65%), Gaps = 20/728 (3%) Strand=Plus/Plus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| | | |||| || | ||||||||| || |||||| ||| ||||| ||||| Sbjct 151657 ATAAAGTTGTTCAAAAGCTTCTCCCCAACAATCTGCCAATCCTGGAGCTTCATTGGGACA 151716 Query 63239 CATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 | || ||||| | | || || ||| ||||| |||||||| | ||| |||| ||| | Sbjct 151717 AAATAAACTCCACTTTTCATC-TCTTTCTACTCGCTTCATAAACAAATCGGGAACCCATA 151775 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 | | ||||| ||||| || || || || || ||||| ||||||| | | ||| | Sbjct 151776 AACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTTCCATGATTCTTTCTCAAATCTA 151835 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 ||| | | | || | |||||| || ||||| || || || | | |||| | | Sbjct 151836 AAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCT 151895 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATA 63476 | |||||| ||||| | ||||| || || | |||| | |||| | ||| || || | Sbjct 151896 TTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTAAATACTCGAAGCATAGGGAACA 151955 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 || || || || | ||||||||||| ||||| | | || ||||| | | Sbjct 151956 ATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGATTTGGTAGCTCGAATGTCGTGA 152015 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63596 | || | || || || || || ||||||| || | || || | || || || ||| Sbjct 152016 ACTGCCAATCCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCA 152075 Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 || |||||||| || || || |||| | || | ||||| ||| | || | Sbjct 152076 TAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGT 152135 Query 63657 CGAGTAGTTCCCGCA-TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AA 63713 |||| || || ||| || || || || || ||||| |||||||| ||||| || || Sbjct 152136 CGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCATGCGTAAAATATTTTCGAGACAA 152195 Query 63714 AGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC---CCATTGATGAATTCCTACTGC 63769 ||| || || |||| ||||| | | || | || || ||| ||||| ||||| || Sbjct 152196 TGTA-ATCATAAGTCTCCAATA-CAGCTTCCAAGTCCAGCCCTTG-TGAATACCTACAGC 152252 Query 63770 GACAC------GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 | || || | ||||| || |||| ||| || | |||| | | | ||| Sbjct 152253 GCAACTCTCGGGCCAACATATGTGTTGGGGTCGTTCCACTACTTTGCCATCCACTCGCAA 152312 Query 63824 -CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63882 || |||| ||||| || || || ||||| || | || ||||||||||| || | Sbjct 152313 GCACTGAGGAACGCTCCAACGTCTTGAACCCAAAGTAATCATAGGAAAAGTCTCGATCAT 152372 Query 63883 AAATAATA 63890 |||||||| Sbjct 152373 AAATAATA 152380 >seq89 Length=114172 Score = 134 bits (148), Expect = 2e-26 Identities = 371/561 (66%), Gaps = 16/561 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || || || |||| || || |||| || || || || ||||| || ||| Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || || || || | ||||||||||||| | || || || |||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTAT 33760 || ||||| || || ||||| |||| || | ||| || ||| | | | | || Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACTCGAAT 97144 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| || | |||||| |||||||||| || || || | |||| |||||| || Sbjct 97145 CCATTTCAACGACCAATCCGCCTTCTTTTC-ACGCAGGGAAGGTTTTCAATGGCAAAGAA 97203 Query 33821 GAG---ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | |||| ||| || ||| || ||| || || |||| | |||||| Sbjct 97204 CAGTCGACGCTTTTCTTCGACACC-TCTCGAATATACGTGTCTATCAGCAACGCATACAT 97262 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 |||||| || | ||||| || |||| ||||| || || ||||| | || |||| | Sbjct 97263 TTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGGAC 97322 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG--GCT 33995 || ||||| || | || || |||| || ||||||||||| || |||| | | || Sbjct 97323 TTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAGCA 97382 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC----GTCTGGTGTTAGTTTATT 34051 ||||| || ||||| || || ||| || | | ||| | ||| | | | | Sbjct 97383 GCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAAT---TC 97439 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||||| | |||| ||| | || |||||||| |||||||| || || ||||| Sbjct 97440 CCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTTCTGC 97499 Query 34112 CTTTTTATACATATTCCAGAT 34132 ||| |||| | |||||| Sbjct 97500 ACGTTTGTACAATTCCCAGAT 97520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816678891760