Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq72 215 5e-51 seq66 206 2e-48 seq82 203 3e-47 seq89 138 1e-27 >seq72 Length=85273 Score = 215 bits (238), Expect = 5e-51 Identities = 369/527 (70%), Gaps = 10/527 (2%) Strand=Plus/Plus Query 11627 AAACACGCAAAAT-CACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 ||||| ||||||| | ||||| ||||| || || || || || || || |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 || || ||||| | |||| ||||| | ||||||||| | | ||| ||||| || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 |||||||| || || || ||||| ||||| | | ||| || | | | | ||| Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAA--CGAAGCAGA-AGA 75799 Query 11806 T---ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 |||||||| ||||| | |||||||| | | || ||| ||| || || Sbjct 75800 CTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 75859 Query 11863 GTTAAA-TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 | ||| |||| | ||||| | |||||||| |||||| || || | || | || Sbjct 75860 TTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 75919 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || | Sbjct 75920 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 75979 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | || |||||| | ||||||||| || | |||||| || |||||||| | Sbjct 75980 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGG 76038 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 | ||||| ||||| | || ||| ||||||| ||| ||| ||| || || | || Sbjct 76039 AAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCC 76098 Query 12102 AATCATCTAAATCTTTTGATAAATC-TACTTCTTCAACGGTCCAAAA 12147 |||| || ||||| ||| || || | ||||||| | |||||||| Sbjct 76099 AATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAA 76145 >seq66 Length=178311 Score = 206 bits (228), Expect = 2e-48 Identities = 377/538 (70%), Gaps = 23/538 (4%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTA------CTTATTAGTTCATTAGAA 11680 ||||| |||||||| ||||| ||||| || || || | || || | || ||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAG--CGTTGGAA 8330 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT-AGCAGCAAATGAACC 11739 ||||| || || ||||| | |||| ||||| | ||||||||| || | ||| ||||| Sbjct 8329 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACC 8270 Query 11740 AGAAAAGAATATTCCCTCCA-CAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT 11798 || || |||||||||| || | || ||||| ||||| | | ||| || | | | Sbjct 8269 CGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAA--CGAAGC 8213 Query 11799 TGCTAGAT---ATCCATTT-TCTG-GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 | ||| |||||||| || | ||||| | |||||||| | | || ||| Sbjct 8212 AGA-AGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCG 8154 Query 11854 TTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAA 11913 ||| || || | ||||||| | ||||| | |||||||| |||||| || || | Sbjct 8153 TTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAG 8094 Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 || | |||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 8093 TAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCG 8034 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 ||| || | | || |||||| | |||||||||| || | |||||| || ||||| Sbjct 8033 TGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACC 7974 Query 12034 AT-CACT--AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 || | || || ||||| ||||| | || ||| ||||||| ||| ||| ||| Sbjct 7973 ATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGT 7914 Query 12091 TAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 || ||| | ||| || || ||||| ||| || || | ||||||| | |||||||| Sbjct 7913 CAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 >seq82 Length=95658 Score = 203 bits (224), Expect = 3e-47 Identities = 368/528 (70%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||| || ||||| ||||| || || || || || || || |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAAA 11745 || || ||||| | |||| |||| | ||||||||| | | ||| ||| || || || Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAA 94636 Query 11746 GAATATTCCCTCCA-CAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAG 11804 |||||||| || | | || ||||||||||| | | ||| || | | | | || Sbjct 94635 AAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAA--CGAAGCAGA-AG 94579 Query 11805 AT---ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | |||||||| ||||| | |||||||| | | || ||| ||| || | Sbjct 94578 ACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTG 94519 Query 11862 CGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 | | ||||||| | ||||| | |||||||| |||||| || || | || | || Sbjct 94518 CTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 94459 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || | Sbjct 94458 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 94399 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCT-CATTTACAATACCATCACTA 12040 | || |||||| | ||||||||| || | ||||| | || |||||||| Sbjct 94398 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAG 94340 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCC 12100 || ||||| ||||| | || ||| ||||||| ||| ||| ||| || || | | Sbjct 94339 GAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTC 94280 Query 12101 CAATCATCTAAATC-TTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 ||||| || ||||| ||| || || | ||||||| | |||||||| Sbjct 94279 CAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 94232 >seq89 Length=114172 Score = 138 bits (152), Expect = 1e-27 Identities = 376/566 (66%), Gaps = 26/566 (5%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| |||||||| || ||||| |||| ||| | ||||| ||||| || | | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || |||||||| || ||||| || | ||||||||| | | |||| ||||||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG---TTGCTAGAT 11806 || || || || |||||||| || || | | || || | || || || || Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCA-AAACTATGAGAACACTCGA- 97142 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||||| | |||||| || ||| |||| ||||| | |||| || || | Sbjct 97143 ATCCATTTCAACGACCAATCCGCCTTC-TTTTCACGCAGGGAAGGTTTTCAATGGC---A 97198 Query 11867 AATAA------ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || || | || ||| ||| | | |||| | ||| || ||||| | || | Sbjct 97199 AAGAACAGTCGACGCTTTTCTTCGACA-CCTCTCGAATATACGTGTCTATCAGCAACGCA 97257 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| || || | ||||||||| || | |||||| ||||| ||||| || || || Sbjct 97258 TACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCG 97317 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCAT--CAC 12038 | ||||| || || | | || || || ||||| || || |||| | Sbjct 97318 GGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCG 97377 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAAT 12094 || ||||| || || | | || ||| |||| | ||| | || || ||| Sbjct 97378 AAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAAT 97437 Query 12095 TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCC 12154 |||||||| || |||| || || || |||||||| || ||||| ||||| || Sbjct 97438 ---TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCT 97494 Query 12155 ACTGATTGTTTATACATTTTCCAGAT 12180 ||| |||| |||| || |||||| Sbjct 97495 TCTGCACGTTTGTACAATTCCCAGAT 97520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524114782480