Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq72 176 6e-39 seq82 154 2e-32 seq74 150 2e-31 seq89 141 1e-28 seq66 140 4e-28 >seq72 Length=85273 Score = 176 bits (194), Expect = 6e-39 Identities = 367/540 (68%), Gaps = 10/540 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 ||| ||||||||| |||| |||| || | |||||| || || ||| | ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | || ||||| || || | |||||| | |||||||||||| ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCA 36325 || || || ||||||||||| || ||||| || | || | || || || | | | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| || Sbjct 75798 GACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 36386 ATAGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | |||| | | ||||| | | |||| | | |||||| || || | || Sbjct 75855 ATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 75914 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | |||| |||| ||||| || ||||| || || || |||||||| |||||||||| || Sbjct 75915 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 75974 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | ||| || || || || ||||| |||||| | ||| || || || || || Sbjct 75975 TTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCATC 76033 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 || ||||| || ||||||||||| ||||| | ||| | || || | || Sbjct 76034 TGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTT 76093 Query 36625 ATTCCAATCATTGATATCTTTAGATATATC-CACTTCTTCCACTGTCCAAAATGATGCCT 36683 |||||||| | | ||| || | || | |||||| | ||||||||||| |||| Sbjct 76094 TTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGCCT 76153 >seq82 Length=95658 Score = 154 bits (170), Expect = 2e-32 Identities = 364/541 (67%), Gaps = 14/541 (3%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||||||||| || ||||| || | |||||| || || ||| | |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-TCCA 36268 | || | || ||||| || || | |||| | |||||||||||| ||| || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 36269 GAAAAGAAAATTCCTTCTA-CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 36324 || || || |||||||||| | || ||||| || | || | || || | | | | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 36325 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| || Sbjct 94580 AGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 94524 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | ||| | | ||||| | | |||| | | |||||| || || | || Sbjct 94523 CATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 94464 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 | |||| |||| ||||| || ||||| || || || |||||||| |||||||||| || Sbjct 94463 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 94404 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA-CTATTCCGT 36563 || | ||| || || || ||||| || |||||| | ||| || | | || || | Sbjct 94403 TTCAGGAATTTGAACATCCCGACAAA-TCTTTCTGCAAGATTCTCCCAAAACGATACCAT 94345 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 | || ||||| || ||||||||||| ||||| | ||| | || || | | Sbjct 94344 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 94285 Query 36624 TATTCCAATCATTGATATCTTTA-GATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 | |||||||| | | ||| || | || | |||||| | ||||||||||| ||| Sbjct 94284 TTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCC 94225 Query 36683 T 36683 | Sbjct 94224 T 94224 >seq74 Length=163707 Score = 150 bits (166), Expect = 2e-31 Identities = 478/728 (66%), Gaps = 20/728 (3%) Strand=Plus/Plus Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 ||| | | |||| || | ||||||||| || ||||||| ||| ||||| ||||| Sbjct 151657 ATAAAGTTGTTCAAAAGCTTCTCCCCAACAATCTGCCAATCCTGGAGCTTCATTGGGACA 151716 Query 66032 CATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 | || ||||| | | || || ||| ||||| |||||||| | ||| |||| ||| | Sbjct 151717 AAATAAACTCCACTTTTCATC-TCTTTCTACTCGCTTCATAAACAAATCGGGAACCCATA 151775 Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 | | ||||||||||| | || || || || ||||| ||||||| | | ||| | Sbjct 151776 AACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTTCCATGATTCTTTCTCAAATCTA 151835 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 ||| | | | || |||||| || ||||| || || || | | |||| | | Sbjct 151836 AAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCT 151895 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT-TGGAATA 66269 | |||||| ||||| | ||||| || || | |||| | |||| | ||| |||| | Sbjct 151896 TTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTAAATACTCGAAGCATAGGGAACA 151955 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || |||||||| || |||||||| || ||||| | | || ||||| | | Sbjct 151956 ATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGATTTGGTAGCTCGAATGTCGTGA 152015 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 | || | || || || || || ||||||| || | || || | || || |||||| Sbjct 152016 ACTGCCAATCCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCA 152075 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 || ||||| || ||| || ||| |||| | || | ||||| ||| | || | Sbjct 152076 TAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGT 152135 Query 66450 CGACTAGTTCCCGCA-TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AA 66506 ||| || || ||| || || || || || ||||| |||||||| ||||| || || Sbjct 152136 CGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCATGCGTAAAATATTTTCGAGACAA 152195 Query 66507 AGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC---CCATTGATGAATTCCTACTGC 66562 ||| || || |||| ||||| | | || | || || ||| ||||| ||||| || Sbjct 152196 TGTA-ATCATAAGTCTCCAATA-CAGCTTCCAAGTCCAGCCCTTG-TGAATACCTACAGC 152252 Query 66563 GACAC------GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 | || || | ||||| || |||| ||| || | ||| | | | ||| Sbjct 152253 GCAACTCTCGGGCCAACATATGTGTTGGGGTCGTTCCACTACTTTGCCATCCACTCGCAA 152312 Query 66617 -CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 66675 || |||| ||||| || || || ||||| || | || ||||||||||| || | Sbjct 152313 GCACTGAGGAACGCTCCAACGTCTTGAACCCAAAGTAATCATAGGAAAAGTCTCGATCAT 152372 Query 66676 AAATAATA 66683 |||||||| Sbjct 152373 AAATAATA 152380 >seq89 Length=114172 Score = 141 bits (156), Expect = 1e-28 Identities = 369/554 (67%), Gaps = 14/554 (3%) Strand=Plus/Plus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || || || |||||||| || ||||| ||||| | || || || || | |||||||||| Sbjct 97002 ATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATG 97061 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 36313 || |||| || ||||||||||| || ||||| || || ||||| |||| || | ||| Sbjct 97062 GA-ACAAAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCG 97120 Query 36314 CCATAAC---CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 36370 || ||| | || || | ||||| || | |||||| |||||| |||| || Sbjct 97121 GCAAAACTATGAGAACACTC--GAATCCATTTCAACGACCAATCCGCCTTC-TTTTCACG 97177 Query 36371 CAAGGCATTGTCTCTATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACA 36427 || || | | || || ||| || | || |||| ||| || ||| || | Sbjct 97178 CAGGGAAGGTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATA 97236 Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || || || |||| | |||||||||||| || | ||||| || |||| |||||| Sbjct 97237 TACGTGTCTATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAG 97296 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || || ||||| | || |||| | |||||||| || | || || |||| || ||| Sbjct 97297 CCATAAAAACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTT 97356 Query 36548 TCATTCACTATTCCGTCACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 36605 |||||||| || || | | | || ||||| || ||||| || || ||| || | | Sbjct 97357 TCATTCACGATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCT 97416 Query 36606 TTTCGTTTGGTGTTAGTTTATT-CCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 ||| | || ||| |||||| | |||| ||| | || |||||||| Sbjct 97417 GTTCTGAAGCCTGAAGCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCG 97476 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 36724 |||||||| || || ||||| ||| |||| | |||||| | |||| || Sbjct 97477 ACTGTCCAGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATA 97536 Query 36725 GGAAAAATAACAAA 36738 ||||| | |||||| Sbjct 97537 GGAAATAGAACAAA 97550 >seq66 Length=178311 Score = 140 bits (154), Expect = 4e-28 Identities = 365/545 (67%), Gaps = 19/545 (3%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA--ATT--CGTTGGAAA 36209 ||||||||| |||||||| || | |||||| || || | | || ||||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GACGCAAATGATCCA 36268 | || | || ||||| || || | |||||| | |||||||||| || ||| || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 36269 GAAAAGAAAATTCC-TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 36324 || || || ||||| ||| || || |||||| | | || | || || | | | | Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAACGAAGCAGA 8210 Query 36325 ACTGTCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 | ||| ||||| || | ||||||| | ||| ||||| | | ||| || ||| Sbjct 8209 AGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 8153 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 || || || | ||| | | ||||| | | |||| | | |||||| || || | Sbjct 8152 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 8093 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 ||| |||| |||| ||||| || ||||| || || || |||||||| |||||||||| Sbjct 8092 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 8033 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 || || | ||| || || || |||||||| |||||| | ||| || || || || Sbjct 8032 GCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCA 7973 Query 36563 T-CACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 | | ||| | ||||| || ||||||||||| ||||| | ||| | || || Sbjct 7972 TACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTC 7913 Query 36620 AG-TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 | ||| ||||| || | | ||| || | || | |||||| | ||||||||||| Sbjct 7912 AACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGA 7853 Query 36679 TGCCT 36683 |||| Sbjct 7852 AGCCT 7848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171837422280