Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq103 95.1 1e-14 seq77 91.5 1e-13 seq36 89.7 5e-13 >seq103 Length=203287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| | ||| || ||||| | ||| || || |||||||| ||||| || | Sbjct 14160 CCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGAC 14219 Query 139598 ATTGTGCTCGAGTCTTCGAGCTG--TTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || || ||||||||| || ||| |||||| | || || | ||| ||||| || | Sbjct 14220 AGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGG 14279 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCC 139714 |||| |||||||| || | | |||| ||| | | ||| | || || | || || Sbjct 14280 GTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCG 14339 Query 139715 ACCTC-AACGGTCACC------GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| |||| | | ||||| || ||||||||||| || ||||||||||| Sbjct 14340 ACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 >seq77 Length=161124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAA-TGTTATAATCGCT 139596 || || | || ||| || || ||||| | |||||||| ||||||| |||| || || | Sbjct 114521 CCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCTCG 114580 Query 139597 C-ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || | | |||| | ||||||||| ||| | |||| ||||||||| || || | Sbjct 114581 AGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGG 114640 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTT---AGCTGTTCCACTGTGTCGGTGGGCT 139712 | || ||||| ||||| || | || | || |||| || | || || | ||||| Sbjct 114641 GAATACCTTCCTTGTCT-TGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCT 114699 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| |||| || | ||||| || || | || ||||||||||| ||||| Sbjct 114700 CCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 139537 GCCGCCTCGT-AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 ||| |||| | |||||||| || ||||||| |||||||| ||||||||||| || || Sbjct 113588 GCCACCTCTTCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTG 113647 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCAT---AGATCAGACGTTGCTGATCGG 139652 | |||| ||||| | |||||||| ||| | |||| ||||||||| || | Sbjct 113648 AGAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGCAAAATCAAACGTTGCTGGTCTG 113707 Query 139653 GAGGTATGCCTTCTTTGTC-GGTGATTTTTTGTTTTAGCTGTTC--CACTGT-GTCGGTG 139708 | || || ||||| ||||| || | || | || | |||| ||| | || | | Sbjct 113708 GGGGAATACCTTCCTTGTCTTGTATATCTTCGACTTGACAGTTCGGAACTATATTCTGAG 113767 Query 139709 GGCTCCACCTCAA-CGGTCAC-CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| | | || ||||| || || | || ||||||||||| ||||| Sbjct 113768 GGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 113825 >seq36 Length=139094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/229 (71%), Gaps = 15/229 (7%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || ||||||| |||||||| |||||||| ||||| || | | | | | Sbjct 92204 AAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTC--TGAAAGAGTAC 92261 Query 139607 GAG--TCTTCGA-GCTGTTTACCAGCATAGATCAGA-CGTTGCTGATCGGGAGGTATGCC 139662 || ||||| | | || || |||||| | |||| | |||||||| || ||||| || || Sbjct 92262 GACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCC 92321 Query 139663 TTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCA 139720 ||| ||||| || | || | || | ||| || | || || | |||||||| ||| Sbjct 92322 TTCCTTGTCT-TGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCA 92380 Query 139721 ACGGT-----CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||| ||||||||||| | || ||||| ||||| ||||| Sbjct 92381 AGAGTTGAAGCAC-GTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063274506400