Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq72 188 1e-42 seq82 161 1e-34 seq66 149 9e-31 seq89 145 1e-29 >seq72 Length=85273 Score = 188 bits (208), Expect = 1e-42 Identities = 372/542 (69%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||| ||||||||| |||| |||| |||| |||||| || || ||| || ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| || || | |||||| | |||||||||||| ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || || || ||||||||||| || ||||| || || || | || || ||| | || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCA-AAC-GAAGCAG 75795 Query 50131 -----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 ||| ||||| || ||||||| | ||| ||||| | | ||| || || || Sbjct 75796 AAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 75852 Query 50186 CTATGGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 | || || | |||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 75853 CCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 75912 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 75913 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 75972 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCG 50364 || || | ||| || || || || ||||| ||| || | ||| || || || || Sbjct 75973 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCA 76031 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 || || ||||| || ||||||||||| ||||| || ||| | | || | Sbjct 76032 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 76091 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATC-TACTTCTTCCACTGTCCAAAATGATGC 50483 || |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76092 TTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 Query 50484 CT 50485 || Sbjct 76152 CT 76153 >seq82 Length=95658 Score = 161 bits (178), Expect = 1e-34 Identities = 368/543 (68%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||||||||| || ||||| |||| |||||| || || ||| || |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070 | || | || ||||| || || | |||| | |||||||||||| ||| || || Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 50071 GAAAAGAAGATTCCTTCTA-CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 || || || |||||||||| | || ||||| || || || | || || ||| | || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCA-AAC-GAAGCA 94583 Query 50130 G-----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | ||| ||||| || ||||||| | ||| ||||| | | ||| || || | Sbjct 94582 GAAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || || || | ||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATT-TTCATTCACTATTCC 50363 || || | ||| || || || || ||||| ||| || | ||| | | || || || Sbjct 94405 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 || || ||||| || ||||||||||| ||||| || ||| | | || | Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 50424 TTTATTCCAATCATTGATATC-TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 || |||||||| | | ||| || | || | |||||| | ||||||||||| | Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAG 94227 Query 50483 CCT 50485 ||| Sbjct 94226 CCT 94224 >seq66 Length=178311 Score = 149 bits (164), Expect = 9e-31 Identities = 370/549 (67%), Gaps = 27/549 (5%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA------CTAATTAGTTCGTTGGA 50009 ||||||||| |||||||| |||| |||||| || || | || || ||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAG--CGTTGGA 8331 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GACGCAAATGACC 50068 ||| || | || ||||| || || | |||||| | |||||||||| || ||| || | Sbjct 8330 AAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAAC 8271 Query 50069 CAGAAAAGAAGATTCC-TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 | || || || ||||| ||| || || |||||| | || || | || || ||| | | Sbjct 8270 CCGAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCA-AAC-GAAG 8214 Query 50128 CTG-----TCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 | | ||| ||||| || | ||||||| | ||| ||||| | | ||| || || Sbjct 8213 CAGAAGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAAT 8157 Query 50181 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 ||| || || | ||| | | ||||| | | |||| | | ||| || ||||| Sbjct 8156 TCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGAT 8097 Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 | ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||| Sbjct 8096 AAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACA 8037 Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 || || || | ||| || || || |||||||| ||| || | ||| || || || Sbjct 8036 TCGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGAT 7977 Query 50361 TCCGT-CACT--GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGG 50417 || | | || || ||||| || ||||||||||| ||||| || ||| | | Sbjct 7976 ACCATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGC 7917 Query 50418 TGT-TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 50476 || | ||| ||||| || | | ||| || | || | |||||| | ||||||| Sbjct 7916 AGTCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAA 7857 Query 50477 ATGATGCCT 50485 |||| |||| Sbjct 7856 ATGAAGCCT 7848 >seq89 Length=114172 Score = 145 bits (160), Expect = 1e-29 Identities = 349/517 (68%), Gaps = 12/517 (2%) Strand=Plus/Plus Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 || |||||||| || ||||| ||||| | || || || || | |||||||||||| || Sbjct 97008 TCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CA 97066 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || || ||||||||||| || ||||| || || ||||| ||||| || | ||| || || Sbjct 97067 AAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAA 97126 Query 50122 CTG-GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 50180 || | | | | ||||| || | |||||| |||||||||| || || || | Sbjct 97127 CTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCTTCTTTTC-ACGCAGGGAAG 97185 Query 50181 CGTTTCTATGGCATTAAAGAG---ATAGtttttttCATTACTATCTTTAACATAAGTATC 50237 |||| |||||| || || | |||| ||| || ||| || ||| || || Sbjct 97186 GTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACACC-TCTCGAATATACGTGTC 97244 Query 50238 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 |||| | |||||||||||| || | ||||| || |||| ||||| || || || Sbjct 97245 TATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAA 97304 Query 50298 ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCAC 50357 ||| | || |||| | || ||||| || | || || | || || ||||||||||| Sbjct 97305 ACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCAC 97364 Query 50358 TATTCCGTCACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC-GTT 50414 || || | | | || ||||| || ||||| || || ||| || || | ||| | Sbjct 97365 GATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAA 97424 Query 50415 GGGTGTTAGTTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCC 50473 | || || ||| |||||| | |||| ||| | || |||||||| ||||||| Sbjct 97425 GCCTG-AAGCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCC 97483 Query 50474 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 | || || ||||| ||| |||| | |||||| Sbjct 97484 AGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGAT 97520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267749531880