Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq72 187 2e-42 seq82 174 2e-38 seq66 167 2e-36 seq89 132 5e-26 >seq72 Length=85273 Score = 187 bits (206), Expect = 2e-42 Identities = 307/438 (70%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAAT-CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||||| ||||||| | ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 || |||||||| | |||| ||||| ||||||||||| | | ||| || || || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 |||||||| || || |||||||| |||| | ||||| ||||||| || Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGC---AGAAGA 75799 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | |||||||| |||||||| | ||| || | |||| | ||| ||| || || Sbjct 75800 CTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 75859 Query 14108 ATTAAA-TAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | ||| |||| |||| || | || | | || ||||| || ||||||| || Sbjct 75860 TTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 75919 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 || |||| || || || |||||||| ||||||||||| ||||| || |||| ||||| | Sbjct 75920 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 75979 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 ||| || ||| | ||||||||| || | ||| || ||| |||||||| | Sbjct 75980 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGG 76038 Query 14287 CTGCAAAAAATGCCAATA 14304 ||||| |||||||||| Sbjct 76039 AAGCAAAGAATGCCAATA 76056 >seq82 Length=95658 Score = 174 bits (192), Expect = 2e-38 Identities = 306/439 (70%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||| || ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC-CCGGAAAA 13987 || |||||||| | |||| |||| ||||||||||| | | ||| || || || || Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAA 94636 Query 13988 GAATATTCCCTC-AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 |||||||| || ||| |||||||| |||| | ||||| ||||||| || | Sbjct 94635 AAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAAGACT 94576 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 |||||||| |||||||| | ||| || | |||| | ||| ||| || | Sbjct 94575 CA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTG 94519 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | ||||||| |||| || | || | | || ||||| || ||||||| || Sbjct 94518 CTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 94459 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 || |||| || || || |||||||| ||||||||||| ||||| || |||| ||||| | Sbjct 94458 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 94399 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATT-TTCATTAACTATACCATCACTA 14285 ||| || ||| | ||||||||| || | ||| | | ||| |||||||| Sbjct 94398 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAG 94340 Query 14286 GCTGCAAAAAATGCCAATA 14304 | ||||| |||||||||| Sbjct 94339 GAAGCAAAGAATGCCAATA 94321 >seq66 Length=178311 Score = 167 bits (184), Expect = 2e-36 Identities = 311/447 (70%), Gaps = 15/447 (3%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCT----ACTAATAAGTTCGTTTGAAAA 13924 ||||| |||||||| ||||| | |||||||| || | | | | |||| ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 13925 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT-TGCAGCAAATGACCCGG 13983 ||| || |||||||| | |||| ||||| ||||||||||| | | ||| || || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 13984 AAAAGAATATTCCC-TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 | || ||||||||| ||||| |||||||| |||| | ||||| ||||||| || Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGC---A 8212 Query 14043 TTGTTCGATATCCATTT-TC-TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 | |||||||| || |||||||| | ||| || | |||| | ||| || Sbjct 8211 GAAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 8152 Query 14101 CAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160 | || || | ||||||| |||| || | || | | || ||||| || ||||||| Sbjct 8151 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 8092 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 |||| |||| || || || |||||||| ||||||||||| ||||| || |||| | Sbjct 8091 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 8032 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 |||| | ||| || ||| |||||||||| || | ||| || ||| ||||||| Sbjct 8031 CTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 7972 Query 14281 -CACT--AGCTGCAAAAAATGCCAATA 14304 | || | ||||| |||||||||| Sbjct 7971 ACTCTGAGGAAGCAAAGAATGCCAATA 7945 >seq89 Length=114172 Score = 132 bits (146), Expect = 5e-26 Identities = 392/594 (66%), Gaps = 19/594 (3%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| | ||| ||||||| || | || || ||||| || | | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || |||||||| || ||||| || |||||||||| || | |||| || || ||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATA-TGGAACAAAAGAACCAGAAAAGAAT 97084 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC-TCCAAACGATGCTTTTTTGTTCGA 14050 || || || || || ||||| || | | || || | |||| ||| |||| Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATG--AGAACACTCGA 97142 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||||| | ||| || | || |||| | | | ||||||| || Sbjct 97143 -ATCCATTTCAACGACCAATCCG-CCTTCTTTTCACGCAGGGAAGGTTTTCAATGGC--- 97197 Query 14111 AAATAAATATTC----CTTCTCTTTAGTAC--TTGAAATGTATGTATCAATAAGTAAGCT 14164 || || | || ||| |||| || | ||| || || || || || || Sbjct 97198 -AAAGAACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGC 97256 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| ||||||| |||||||| || | ||||| |||||||| || | ||||| Sbjct 97257 ATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTC 97316 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT--CA 14282 | ||||||||| | | || | | ||||| |||||||| || || |||| | Sbjct 97317 GGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCC 97376 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG-TTT 14341 ||| ||||| || ||||| | || || |||| || ||| | | || Sbjct 97377 GAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAA 97436 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 || |||||| || || | ||| | || ||||| || |||||||| |||||||| | Sbjct 97437 TTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTTC 97496 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || ||| |||| | |||| |||| | ||||| ||||||||| | ||||| Sbjct 97497 TGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAACAAA 97550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727298397800