Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq72 196 5e-45 seq82 188 7e-43 seq66 178 1e-39 seq89 136 4e-27 >seq72 Length=85273 Score = 196 bits (216), Expect = 5e-45 Identities = 310/438 (71%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAAT-CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 ||||| ||||||| | ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 || |||||||| | |||| ||||| ||||||||||| | | || || || || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 |||||||| || || |||||||| |||| || ||||| ||||||| || | Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGC--AGAAGAC 75800 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 | | |||||||| |||||||| | ||| || | |||| | ||| ||| ||||| Sbjct 75801 TCA-ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 75859 Query 13896 ATTGAA-TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | || |||| | |||| || | || | | || ||||| || ||||||| || Sbjct 75860 TTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 75919 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 || |||| || || || ||||| || ||||||||||| ||||| ||||||| ||||| | Sbjct 75920 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 75979 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||| || ||| | |||||||||||| | || || ||| |||||||| | Sbjct 75980 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGG 76038 Query 14075 CTGCAAAAAATGCCAATA 14092 ||||| |||||||||| Sbjct 76039 AAGCAAAGAATGCCAATA 76056 >seq82 Length=95658 Score = 188 bits (208), Expect = 7e-43 Identities = 310/439 (71%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||| || ||||| | |||||||| || ||| || ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA-TCCGGAAAA 13775 || |||||||| | |||| |||| ||||||||||| | | || || ||| || || Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAA 94636 Query 13776 GAATATTCCCTC-AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 |||||||| || ||| |||||||| |||| || ||||| ||||||| || | Sbjct 94635 AAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAA--GA 94578 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 | | |||||||| |||||||| | ||| || | |||| | ||| ||| |||| Sbjct 94577 CTCA-ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTG 94519 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | | |||||| | |||| || | || | | || ||||| || ||||||| || Sbjct 94518 CTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 94459 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 || |||| || || || ||||| || ||||||||||| ||||| ||||||| ||||| | Sbjct 94458 ACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 94399 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCA-AGTTTTCATTAACAATACCATCACTA 14073 ||| || ||| | |||||||||||| | | | | | ||| |||||||| Sbjct 94398 GAATTTGAACATCC-CGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAG 94340 Query 14074 GCTGCAAAAAATGCCAATA 14092 | ||||| |||||||||| Sbjct 94339 GAAGCAAAGAATGCCAATA 94321 >seq66 Length=178311 Score = 178 bits (196), Expect = 1e-39 Identities = 370/538 (69%), Gaps = 20/538 (4%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCT----ACTAATAAGTTCGTTTGAAAA 13712 ||||| |||||||| ||||| | |||||||| || | | | | |||| ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 13713 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGG 13771 ||| || |||||||| | |||| ||||| ||||||||||| | | || | | || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 13772 AAAAGAATATTCCCT-CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 | || |||||||||| |||| |||||||| |||| || ||||| ||||||| || Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA 8209 Query 13831 TTGTTTGATATCCATTT-TCT-AGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 13888 | | | |||||||| || |||||||| | ||| || | |||| | ||| || Sbjct 8208 --GACTCA-ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 8152 Query 13889 CGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 | ||||| | |||||| | |||| || | || | | || ||||| || ||||||| Sbjct 8151 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 8092 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 |||| |||| || || || ||||| || ||||||||||| ||||| ||||||| | Sbjct 8091 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 8032 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 |||| | ||| || ||| ||||||||||||| | || || ||| ||||||| Sbjct 8031 CTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 7972 Query 14069 -CACT--AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT---ATTGCTCTTCATTGT 14122 | || | ||||| |||||||||| | ||||||| || ||| || || Sbjct 7971 ACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCA--GT 7914 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | ||||||||| || | ||||| || | || | ||| ||| | |||||||| Sbjct 7913 CAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 >seq89 Length=114172 Score = 136 bits (150), Expect = 4e-27 Identities = 390/590 (66%), Gaps = 11/590 (2%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||||||| | ||| ||||||| || | || || ||||| || | | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || |||||||| || ||||| || ||||||||||| | | | || || || ||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA-CGATGCTTTTTTGTTTGA 13838 || || || || || ||||| || | || || || |||| | ||| | || Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACAC--TCGA 97142 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||||| | ||| || | || |||| | | | |||| || ||| Sbjct 97143 -ATCCATTTCAACGACCAATCCGCCTTCTTTTCACGCAGGGAAGGT-TTTCAATGGCAAA 97200 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | ||| |||| || | ||| || || || || || || |||| Sbjct 97201 GAACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCATAC 97260 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||| ||||||| ||||| || || | ||||| ||||||||||| | ||||| | Sbjct 97261 ATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGG 97320 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT--CACTAG 14074 |||||| || | | || | |||||||||||||||| || || |||| | || Sbjct 97321 ACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAG 97380 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG-TTTTTTC 14133 | ||||| || ||||| | || || |||| || ||| | | || || | Sbjct 97381 CAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAATTCC 97440 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 ||||| || || | ||| | || ||||| || |||||||| |||||||| | || Sbjct 97441 CAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTTCTGCA 97500 Query 14194 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| |||| | |||| |||| | ||||| ||||||||| | ||||| Sbjct 97501 CGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAACAAA 97550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588100063880