Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq72 187 3e-42 seq82 165 1e-35 seq66 154 2e-32 seq89 136 5e-27 >seq72 Length=85273 Score = 187 bits (206), Expect = 3e-42 Identities = 368/538 (68%), Gaps = 10/538 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAAT-CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||| ||||||||| |||| |||| |||| ||||||||| || ||| | ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||| || || | |||||| | ||||||||| || ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCA 42232 || || || ||||||||||| || ||||| || | || | || || || | | | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| ||||| || ||||||| | ||| ||||| | | ||| || || ||| Sbjct 75798 GACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 42293 ATGGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | |||| | | ||||| | | |||| | | |||||| ||||| | || Sbjct 75855 ATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 75914 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | |||| |||||||||| || ||||| || || ||||||||||| |||||||||| || Sbjct 75915 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 75974 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | || || || || || ||||| ||| || | ||| || || || || || Sbjct 75975 TTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCATC 76033 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT 42531 || ||||| || ||||||||||| ||||| | ||| || | || || || Sbjct 76034 TGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTT 76093 Query 42532 ATTCCAATCATTGATATCTTTAGATATATC-TACTTCTTCTACCGTCCAAAATGATGC 42588 |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76094 TTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 >seq82 Length=95658 Score = 165 bits (182), Expect = 1e-35 Identities = 365/539 (68%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||||||||| || ||||| |||| ||||||||| || ||| | |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA-TCCA 42175 | || | || ||||| || || | |||| | ||||||||| || ||| || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 42176 GAAAAGAAGATTCCTTCTA-CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231 || || || |||||||||| | || ||||| || | || | || || | | | | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | ||| ||||| || ||||||| | ||| ||||| | | ||| || || ||| Sbjct 94580 AGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 94524 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | ||| | | ||||| | | |||| | | |||||| ||||| | || Sbjct 94523 CATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 94464 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | |||| |||||||||| || ||||| || || ||||||||||| |||||||||| || Sbjct 94463 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 94404 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT-TTCGTTCACTATTCCGT 42470 || | || || || || || ||||| ||| || | ||| | | || || || | Sbjct 94403 TTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACCAT 94345 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 | || ||||| || ||||||||||| ||||| | ||| || | || || | Sbjct 94344 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 94285 Query 42531 TATTCCAATCATTGATATC-TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 | |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 94284 TTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGC 94226 >seq66 Length=178311 Score = 154 bits (170), Expect = 2e-32 Identities = 367/543 (68%), Gaps = 19/543 (3%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTA--ATT--CGTTGGAAA 42116 ||||||||| |||||||| |||| ||||||||| || | | || ||||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-AGACGCAAATGATCCA 42175 | || | || ||||| || || | |||||| | ||||||||| ||| ||| || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 42176 GAAAAGAAGATTCC-TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 42231 || || || ||||| ||| || || |||||| | | || | || || | | | | Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAACGAAGCAGA 8210 Query 42232 ACTGTCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | ||| ||||| || | ||||||| | ||| ||||| | | ||| || || | Sbjct 8209 AGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 8153 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || || | ||| | | ||||| | | |||| | | |||||| ||||| | Sbjct 8152 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 8093 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 ||| |||| |||||||||| || ||||| || || ||||||||||| |||||||||| Sbjct 8092 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 8033 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || || | || || || || |||||||| ||| || | ||| || || || || Sbjct 8032 GCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCA 7973 Query 42470 T-CACT--GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526 | | || || ||||| || ||||||||||| ||||| | ||| || | || Sbjct 7972 TACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTC 7913 Query 42527 AA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 || ||| ||||| || | | ||| || | || | |||||| | ||||||||||| Sbjct 7912 AACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGA 7853 Query 42586 TGC 42588 || Sbjct 7852 AGC 7850 >seq89 Length=114172 Score = 136 bits (150), Expect = 5e-27 Identities = 373/563 (66%), Gaps = 20/563 (4%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || || || |||| || ||||||| || || || |||||||| || ||| Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| | || || || || | ||||||||| || |||| || ||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGT 42241 || ||||| || || ||||| |||| || | ||| || ||| | || || | Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACTC--GA 97142 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || | |||||| |||||| |||| || || || | |||| |||||| Sbjct 97143 ATCCATTTCAACGACCAATCCGCCTTC-TTTTCACGCAGGGAAGGTTTTCAATGGCAAAG 97201 Query 42302 AAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 || | || |||| ||| || ||| || ||| || || |||| | |||| Sbjct 97202 AACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATATACGTGTCTATCAGCAACGCATAC 97260 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 ||||| || || | ||||| || |||| ||||| || || ||||| | || |||| Sbjct 97261 ATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGG 97320 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG--G 42476 || |||||||| || | || || | || || ||||| ||||| || || | | | | Sbjct 97321 ACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAG 97380 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC----GTCCGGTGTTAATTTA 42532 | ||||| || ||||| || || ||| || | | ||| | | | | ||| Sbjct 97381 CAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAAT--- 97437 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | |||||| | |||| ||| | || |||||||| || ||||| || |||||| Sbjct 97438 TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTTCT 97497 Query 42593 GCCTTTTTATACATATTCCAGAT 42615 || ||| |||| | |||||| Sbjct 97498 GCACGTTTGTACAATTCCCAGAT 97520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138218458920