Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq36 100 2e-16 seq77 95.1 9e-15 >seq36 Length=139094 Score = 100 bits (110), Expect = 2e-16 Identities = 170/242 (70%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 43892 CAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCG 43951 ||||| || |||| | || ||||| || || || ||| |||||||||||||| || Sbjct 91777 CAACCACCCCTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCT 91836 Query 43952 TTTAAT------TGACGCTCAT---CGTCCAATTGTTTTCCTGCAAATATC-AACCGTTG 44001 ||| | | ||| || || ||| ||| ||||| ||||||||| || ||||| Sbjct 91837 GGAAATCACGACTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTTG 91896 Query 44002 CTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTG-TTTGACCATAGCAACAGTAT 44060 |||||| |||| | ||||| |||||| || || | ||||| | ||| ||| | Sbjct 91897 CTGGTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTGT 91956 Query 44061 CTGCCGGCTCCACATCGACCGT-AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGC 44119 ||| |||||||| || | || ||| || || || || | |||||||||||||| ||| Sbjct 91957 CTGAAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGC 92016 Query 44120 AT 44121 || Sbjct 92017 AT 92018 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/229 (71%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 43901 CTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG- 43959 ||||| | || ||||| || || || ||| |||||||||||||| || | || | Sbjct 92201 CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTC-TGAAAGAGT 92259 Query 43960 ACGCTCATCGTCCAA-TTGTTTTCCTGCAAATATC-AACCGTTGCTGGTCCTGAGGTACA 44017 ||| |||| || || ||| ||||| ||||||||| || ||||||||||| |||| | Sbjct 92260 ACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATT 92319 Query 44018 CCTTCTTTATCTGAAATTTTTTGTTTGAC-CATAGCAACAGTATCTGCCGGCTCCACATC 44076 ||||| || ||| || || ||||| | ||| |||||||| |||||||| || Sbjct 92320 CCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTC 92379 Query 44077 GACCGT--AA--TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || ||||| | ||||| |||||||| ||||| Sbjct 92380 AAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 >seq77 Length=161124 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| ||||| |||||||| ||||| ||||||||||| | || | |||||| || ||| Sbjct 114598 TCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCT 114657 Query 44030 GAAATTTTTTGTTTGAC--CATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || || ||||| | | ||| |||||||| |||||||| || | ||||| | Sbjct 114658 TGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATGG 114717 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || | |||||| || ||||| ||||| Sbjct 114718 TCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777094109316