Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq72 192 5e-44 seq82 179 3e-40 seq66 163 2e-35 seq89 156 4e-33 >seq72 Length=85273 Score = 192 bits (212), Expect = 5e-44 Identities = 371/539 (69%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAAT-CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||| || ||||||||||| | || ||||| || ||||| || || |||||||| ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||| | || ||||| || |||| ||||| | ||||||||| | | ||| |||||| Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || |||||||||||||| || || ||||| |||| || | |||| || ||| | | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGA- 75796 Query 13322 TTACTCTCTATCCACTTTCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 | ||| ||||| |||| | ||||| || ||||| | | || || || ||| Sbjct 75797 --AGACTCAATCCA-TTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 75853 Query 13381 TATTGCGTTAAA-TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 ||||| | ||| |||| | ||||||| | ||| ||||| || || || | || Sbjct 75854 CATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 75913 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 |||| |||||||||| ||||||||||| ||||| || || ||||| ||||||| | Sbjct 75914 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 75973 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 | || | | ||||| || | |||||||||||| | || || ||| || || | Sbjct 75974 CTTCAGGAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 76032 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 | | |||||| || || | || || ||||| | ||| | | | | ||||| Sbjct 76033 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 76092 Query 13620 TTAACCAATCTGGAAAATCTTTTGATAAATC-TACCTCCTCAACGGTCCAAAAAGAAGC 13677 || ||||||| ||||| ||| || || | || ||| | |||||||| ||||| Sbjct 76093 TTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 >seq82 Length=95658 Score = 179 bits (198), Expect = 3e-40 Identities = 370/540 (69%), Gaps = 13/540 (2%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || ||||||||| || || ||||| || ||||| || || |||||||| |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA-CCC 13261 |||| | || ||||| || |||| |||| | ||||||||| | | ||| ||| ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 13262 GaaaaaaaTATTCCTTC-AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 || |||||||||||||| ||| || ||||| |||| || | |||| || ||| | | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 13321 TTTACTCTCTATCCACTTTCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | ||| ||||| |||| | ||||| || ||||| | | || || || || Sbjct 94580 ---AGACTCAATCCA-TTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 94525 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | ||||| | ||||||| | ||||||| | ||| ||||| || || || | || Sbjct 94524 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 94465 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 |||| |||||||||| ||||||||||| ||||| || || ||||| ||||||| | Sbjct 94464 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 94405 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTA-AGTTTTCGTTAACTATCCCG 13558 | || | | ||||| || | |||||||||||| | | | | | ||| || || Sbjct 94404 CTTCAGGAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCA 94346 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618 || | |||||| || || | || || ||||| | ||| | | | | |||| Sbjct 94345 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 94286 Query 13619 TTTAACCAATCTGGAAAATC-TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 ||| ||||||| ||||| ||| || || | || ||| | |||||||| ||||| Sbjct 94285 TTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGC 94226 >seq66 Length=178311 Score = 163 bits (180), Expect = 2e-35 Identities = 370/545 (68%), Gaps = 20/545 (4%) Strand=Plus/Minus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTA------CTTATTAGCTCGTTTGA 13200 || |||||||||||| || ||||| || ||||| || | || ||| ||| || Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGC--GTTGGA 8331 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT-AGCAGCAAACGAAC 13259 |||||| | || ||||| || |||| ||||| | ||||||||| || | ||| |||| Sbjct 8330 AAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAAC 8271 Query 13260 CCGaaaaaaaTATTCC-TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 |||| ||||||||||| |||||| || ||||| |||| || | |||| || ||| | | Sbjct 8270 CCGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCA 8212 Query 13319 TTTTTACTCTCTATCCACTT-TCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 | ||| ||||| || || | ||||| || ||||| | | || || || Sbjct 8211 GA---AGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTC 8155 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 ||| ||||| | ||||||| | ||||||| | ||| ||||| || || || | Sbjct 8154 GTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 8095 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 || |||| |||||||||| ||||||||||| ||||| || || ||||| ||||||| Sbjct 8094 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 8035 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 || || | | ||||| || ||||||||||||| | || || ||| || | Sbjct 8034 GTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATAC 7975 Query 13557 CGT-CACT--AGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTG 13613 | | | || | |||||| || || | || || ||||| | ||| | | | | Sbjct 7974 CATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAG 7915 Query 13614 ACAAC-TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 |||| ||| ||| ||| ||||| ||| || || | || ||| | |||||||| Sbjct 7914 TCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAAT 7855 Query 13673 GAAGC 13677 ||||| Sbjct 7854 GAAGC 7850 >seq89 Length=114172 Score = 156 bits (172), Expect = 4e-33 Identities = 323/471 (69%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 13117 TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTC 13176 ||||||| | |||| ||| | || ||| | || ||||| ||||| ||||| ||||| Sbjct 96935 TAATGGATG--TTGA-AGAAGACTATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTC 96991 Query 13177 ATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAAT 13236 ||||| ||| | ||| || ||||| || || || ||||| | ||| ||||| || | Sbjct 96992 ATCTCGTGATATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAA 97051 Query 13237 CCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 ||||||||| | | |||| ||||| ||||| ||||| ||||| || |||||||| || | Sbjct 97052 CCAAAATATGGAA-CAAAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAAC 97110 Query 13297 CAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTT 13355 || | || || | ||||| || ||| | |||| || | ||| | || | Sbjct 97111 CAGACGCTCGGCAAA---ACTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCT 97167 Query 13356 TTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA------ATAAtttttttCCT 13409 | | ||| |||||| | ||||| || || ||| || | |||| ||| Sbjct 97168 TCT-TTTCACGCAGGGAAGGTTTTCAATGGC---AAAGAACAGTCGACGCTTTTCTTCGA 97223 Query 13410 TACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCA 13469 || ||| |||||| || ||||||| || ||||||||| || || | |||||||| Sbjct 97224 CACC-TCTCGAATATACGTGTCTATCAGCAACGCATACATTTCCGAGTGTACATTTTCCA 97282 Query 13470 TCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATC 13529 |||| | ||| || ||||||||||| | || || | || || ||||||| | || | Sbjct 97283 TCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAAC 97342 Query 13530 TTTCTGCTAAGTTTTCGTTAACTATCCCGT--CACTAGCAGCaaaaaaaGC 13578 |||| |||||||| || || || || | | ||||||||| ||||| Sbjct 97343 GAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAGCAGCAAAGAAAGC 97393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981785446034