Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq72 201 3e-46 seq82 187 6e-42 seq103 185 2e-41 seq66 154 3e-32 seq36 129 1e-24 seq58 125 2e-23 seq89 100 7e-16 seq77 95.1 3e-14 >seq72 Length=85273 Score = 201 bits (222), Expect = 3e-46 Identities = 379/545 (70%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTA-GATCTGTCTTATGACTTAATAGATTGGAAAAA 268818 ||||| |||||||||| |||||| | || |||| ||| || |||||||||||| Sbjct 76151 GCTTCATTTTGGACTGCTGAAGAAATCCGACTTGTCAGGTGATTTGGAAGATTGGAAAAA 76092 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGT-- 268876 || | |||| ||| | ||||| ||| || | | || || ||||| || | Sbjct 76091 GTTGACTGCAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGC--TTCCTCA 76034 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||||||| || ||||| | ||| ||| | |||| || || || ||||||||| Sbjct 76033 GATGGTATCGTTTTGGAGAATCTTGCAGA-AAGATTTGTCGGGATGTTCAAATTCCTGAA 75975 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || ||||||| || ||||| |||||||| || |||||||| |||||||| | ||| | Sbjct 75974 GCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATCCATTCAGAAACGTATTCT 75915 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTA-TTTTCTTCTAT 269055 ||| | || || || |||||| ||| | |||||| | || ||| | || Sbjct 75914 CTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTACTTTGAAGCAAT 75855 Query 269056 GAGAAC-TATGGACTGT-GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 | |||| || ||| |||| || ||| | ||||||||||||||||||| | | Sbjct 75854 G-GAACGAATTCCGTGTATTGAG-AAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT 75797 Query 269114 AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCG 269173 || | | | ||| | | || |||||||| || |||||||| ||||| || ||| Sbjct 75796 TCTGCTTCGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCG 75737 Query 269174 GGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 || || ||| | || ||||||||||| || ||||| || |||||||| || || || Sbjct 75736 GGTTCCTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTT 75677 Query 269234 TCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCG-ACTTCGCTTGTTTATTATT 269292 || ||||| |||| ||||| || ||||| || |||| | || || ||||| || | Sbjct 75676 TCCAACGAGCTGATTTCAAGGGATGAGGGTTTGCATTGCGAATTTTGCATGTTTGTTGTA 75617 Query 269293 TACTA 269297 | ||| Sbjct 75616 TTCTA 75612 >seq82 Length=95658 Score = 187 bits (206), Expect = 6e-42 Identities = 379/547 (69%), Gaps = 18/547 (3%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTA-TGACTTAATAGATTGGAAAAA 268818 ||||| |||||||||| |||||| | || |||| ||| || |||||||||||| Sbjct 94226 GCTTCATTTTGGACTGCTGAAGAAATCGACTTGTCAGGCTGATTTGGAAGATTGGAAAAA 94285 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGT-- 268876 || | |||| ||| | ||||| ||| || | | || || ||||| || | Sbjct 94286 GTTGACTGCAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGC--TTCCTCA 94343 Query 268877 GATGGTATCGTTAACGAA-AATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 |||||||||||| | | ||||| | ||| ||| | |||| || || || |||||||| Sbjct 94344 GATGGTATCGTTTTGGGAGAATCTTGCAGA-AAGATTTGTCGGGATGTTCAAATTCCTGA 94402 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||| ||||||| || ||||| |||||||| || |||||||| |||||||| | ||| Sbjct 94403 AGCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATCCATTCAGAAACGTATTC 94462 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT 269055 |||| | || || || |||||| ||| | |||||| | ||||| | || Sbjct 94463 TCTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAAT 94522 Query 269056 GAGAAC-TATGGACTGT-GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 | |||| || ||| |||| || ||| | ||||||||||||||||||| | | Sbjct 94523 G-GAACGAATTCCGTGTATTGAG-AAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT 94580 Query 269114 AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTG-TAGAAGGTATATTCTTTTC 269172 || | | | ||| | | || || ||||| || | ||||||| ||||| || || Sbjct 94581 TCTGCTTCGTTTGCTGAACGTCTGGTAGCATTTGCTGCGGTTAGAAGGAATATTTTTCTC 94640 Query 269173 GGGGT--CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 ||| | |||||| | || |||||||| ||||||||| || |||||||| || || Sbjct 94641 GGGATTCCTTTTG-TTCCATATTTTGGTT---GAAAAGAGGTCTCATGCCAGGCTTGACA 94696 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 || || ||||| |||| ||||| || ||||| || ||||| || || ||||| || Sbjct 94697 TTTTCCAACGAGCTGATTTCAAGGGATGAGGGTTTGCATTGCGAATTTGCATGTTTGTTG 94756 Query 269291 TTTACTA 269297 | | ||| Sbjct 94757 TATTCTA 94763 >seq103 Length=203287 Score = 185 bits (204), Expect = 2e-41 Identities = 186/240 (78%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || |||| ||| | ||| | || || || ||||| || |||||||||||||| Sbjct 14157 ATACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCC 14216 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTG--TTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 || |||||||| |||||||| ||||| ||| |||||||| || ||||| |||||||||| Sbjct 14217 GACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAG 14276 Query 104448 GAGGTATTCCTTCTTTATCCTG-AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 | ||||| ||||||||||| || |||||||| ||| |||||||||| ||||| |||| Sbjct 14277 GGGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGT 14336 Query 104507 TCTACCTCTA-------GTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||| | || | ||||| || || | ||||| |||||||| ||||| Sbjct 14337 TCGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 >seq66 Length=178311 Score = 154 bits (170), Expect = 3e-32 Identities = 369/544 (68%), Gaps = 23/544 (4%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| |||||||||| |||||| | || |||| ||| || ||| |||||||| Sbjct 7850 GCTTCATTTTGGACTGCTGAAGAAATCGACTTGTCAGGTGATTTGGAAGACTGGAAAAAA 7909 Query 268820 -TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG--TTAGT 268876 || | |||| ||| | ||||| ||| || | | || || ||||| | || Sbjct 7910 GTTGACTGCAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGA 7969 Query 268877 G-ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 | ||||||||||| || ||||| | ||| | || |||| || || || |||||||| Sbjct 7970 GTATGGTATCGTTTTGGAGAATCTTGCAGAAAGATTTTGTCGGGATGTTCAAATTCCTGA 8029 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||| ||||||| || ||||| |||||||| || |||||||| |||||||| | ||| Sbjct 8030 AGCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATCCATTCAGAAACGTATTC 8089 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT 269055 |||| | || || || |||||| ||| | |||||| | ||||| | || Sbjct 8090 TCTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAAT 8149 Query 269056 GAGAAC-TATGGACTGT-GTGAGaaaaaaaTCTGAATGGGCTCT--GAAATGGATAAACG 269111 | |||| || ||| |||| || ||| | |||||||||| ||||||||| | Sbjct 8150 G-GAACGAATTCCGTGTATTGAG-AAGAAAGCCAAATGGGCTCTGAGAAATGGATTGAGT 8207 Query 269112 ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAA-GGTATATTCTTT 269170 | || | | | ||| | | || || ||||| || || ||| || ||||| || Sbjct 8208 CTTCTGCTTCGTTTGCTGAACGTCTGGTAGC-TTTGCTGCGGTTGAAGGGAATATTTTTC 8266 Query 269171 TCGGGGT-CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAAC 269229 ||||| | |||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 8267 TCGGGTTCCTTTTGTTCTCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGAC 8326 Query 269230 TTTCTCTAAC-------GAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 || || ||| | | || || ||||| || ||||| || ||||| || || | Sbjct 8327 ATTTTCCAACGCTCATGGGACTGTTA---AGGGATGAGGGTTTGCATTGCGATTTTGCAT 8383 Query 269283 GTTT 269286 |||| Sbjct 8384 GTTT 8387 >seq36 Length=139094 Score = 129 bits (142), Expect = 1e-24 Identities = 155/205 (76%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT-AGTTGTTTTCC 104421 ||||| || || |||||||||||||| || ||||| | ||| |||||| ||||| ||||| Sbjct 92225 GTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTTGCTTTCC 92284 Query 104422 AGCAAAAAT-TAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTT 104480 |||||| || | | || || || ||||| |||||||| || || || ||||| | | Sbjct 92285 AGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTATCTTGGACT 92344 Query 104481 TTACATTT-TCTACGGTATCGCTAGGTTCTACCTCTAGTGT--AA--TAGTCTTACCAGT 104535 | |||||| || | ||||| ||| || || || || || || ||||| || || Sbjct 92345 TGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGT 92404 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 |||||| |||||||||||||||||| Sbjct 92405 AAGTGTCTTTACAAATATCTGCATT 92429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGC-CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| ||||||||||| || | | || || || ||||| |||||||| ||||| || Sbjct 91867 AGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTG 91926 Query 104470 AATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT-AATAGTC 104527 ||||| | || || || || | || || ||| || || || || || ||| ||| Sbjct 91927 TATCTTGGGACTTGACGTTCTCAATAGTGTCTGAAGGCTCCACTTCAAGAGTGAATGGTC 91986 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || |||||||| || ||||||||||||||| Sbjct 91987 TTGCCTGTAAGTGTCTTCACAAATATCTGCATT 92019 >seq58 Length=124683 Score = 125 bits (138), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTAC--CG---TCTTCTA 104411 || || |||||||| || || ||||||||||| ||||||||||| | || ||||| | Sbjct 62598 TGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCTCTTCCA 62657 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 ||| || || ||||| || | | ||||||||| ||||| ||||| || || || || | Sbjct 62658 ATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGTCTTGTA 62717 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531 | || | ||||| ||||| | || ||| ||| || || || | ||||| ||||| | Sbjct 62718 TTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGGTCTTGC 62777 Query 104532 CAGTAAGTGTTTTTACA 104548 |||||||||| | |||| Sbjct 62778 CAGTAAGTGTCTATACA 62794 >seq89 Length=114172 Score = 100 bits (110), Expect = 7e-16 Identities = 364/554 (66%), Gaps = 22/554 (4%) Strand=Plus/Minus Query 268743 TGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACT 268802 ||||||||| || | ||| ||| ||||| || |||||||| || ||||| | |||| Sbjct 97510 TGTACAAACGTGCAGAAGCTAGTTTCTGGACAGTCGAAGAAGTCGACTTGTCTCAAGACT 97451 Query 268803 TAATAGATTGGAAAAAT--TTAAAAC--CAGAAGAAAGAAGATTTATATCTTATATTCTT 268858 | |||||| || || | | ||||| | | | || ||||| | || | Sbjct 97450 TGCGGGATTGGGAATTCGCTTCAGGCTTCAGAACA--GCAC-TTCATATCCCACGTTTTG 97394 Query 268859 GCGTTTTTTGCAG-TTAGTG-ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTC 268916 || || ||||| | || | | |||| ||||| || ||||| | | || ||| | Sbjct 97393 GCTTTCTTTGCTGCTTCGGGTATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTCAGCA 97334 Query 268917 AAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATA 268976 || ||||| | || ||||| | |||||||| || || || | || || |||||| Sbjct 97333 CCGAAGTACAAGTCCCCGAAGCGCGTTGTTTTTATGGCTTTCAACTGGCGATGGAAAATG 97274 Query 268977 TTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT---AGATGATAACAACGAAA 269033 | || || || ||||| | | ||||| || ||||| ||| | | | | |||| Sbjct 97273 TACACTCGGAAATGTATGCGTTGCTGATAGACACGTATATTCGAGAGG-TGTCGAAGAAA 97215 Query 269034 AGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 || |||| || | | | || || ||| | ||| |||| ||| || | || ||| Sbjct 97214 AGCGTCGACTGTTCTTTGCCATTGAAAACCTTCC-CTGCGTGA-AAAGAAGGCGGATTGG 97157 Query 269093 GCTCTGAAATGGATAAACGATAGCGCGCCT---TACGGAGAAAGGTTAGTTGCTTTTGCC 269149 | |||||||||| ||| | | | | | | || | | ||||||||||| Sbjct 97156 TCGTTGAAATGGATT--CGAGTGTTCTCATAGTTTTGCCGAGCGTCTGGTTGCTTTTGCA 97099 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || ||||| ||||||||||| || ||||||| | || ||||||||||||||| | Sbjct 97098 GCGGTCGAAGGGATATTCTTTTCTGGTTCTTTTG-TTCCATATTTTGGTTGAAGAAACGG 97040 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || | ||||| ||| | || || || || || |||||| | || ||||| || || Sbjct 97039 GGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCACGAGATGAAGGCTTGCAT 96980 Query 269270 TGCGACTTCGCTTG 269283 || || || ||||| Sbjct 96979 TGTGAATTTGCTTG 96966 >seq77 Length=161124 Score = 95.1 bits (104), Expect = 3e-14 Identities = 176/249 (71%), Gaps = 11/249 (4%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAA-TA 104380 ||||| ||||| || ||||| | |||| | || || | ||||| || || |||| | Sbjct 114511 TATTTGCATTCCACCCCTTAGACGTAAGACCAAG-TGGAGAGTAGACTCCTTTTGAAATG 114569 Query 104381 TTATAGTCAGATAGAGTTCTACCGT--CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 || ||||| ||||| | ||| | |||| | ||||| || |||||||| | | | Sbjct 114570 TTGTAGTCTCG-AGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTT 114628 Query 104439 GTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT--ACGGT 104496 | || || || || || ||||| || || || ||||| | || ||| |||| | || Sbjct 114629 GCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGT 114688 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || ||||| ||||| |||||||| || ||||| |||||||| Sbjct 114689 ATCTGAGGGCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTG 114748 Query 104557 CATT-TTGT 104564 |||| |||| Sbjct 114749 CATTATTGT 114757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396673981836