Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq77 109 5e-19 seq103 95.1 1e-14 seq36 89.7 5e-13 >seq77 Length=161124 Score = 109 bits (120), Expect = 5e-19 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC-GTTA 94831 ||| || ||| || || | || || |||||||| | |||||| |||||||| | ||| Sbjct 114513 TTTGCATTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTG 114572 Query 94832 TAATCGCTCATAGTGTTGGAATCC--TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 || || | | |||| || | |||| |||||| || |||| || || | ||||| Sbjct 114573 TAGTCTCG-AGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCT 114631 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC--GCCGACAGTGTC 94947 | ||||| ||||||||||| ||||| | || || | |||||| || | | ||| || Sbjct 114632 GGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATC 114691 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || |||| || ||||| || ||||||||||| || || || |||||||| Sbjct 114692 TGAGGGCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Score = 105 bits (116), Expect = 6e-18 Identities = 172/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 94781 CCTCCTCT-CAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 || ||||| ||| |||||||||||||| | |||||| |||||||| | ||| || | || Sbjct 113589 CCACCTCTTCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGT--CT 113646 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCA---AAGATTAATCTTTGCTGATCT 94894 | || || || ||| |||| |||||| | ||| || || || | |||||| ||| Sbjct 113647 GAGAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGCAAAATCAAACGTTGCTGGTCT 113706 Query 94895 GGAGGAATACCTTCTTTGTC--ATAAATTTTTGCCTTGACGGCGCCGA--CAGTGTCAGC 94950 || ||||||||||| ||||| || || || | |||||| | | || | || | Sbjct 113707 GGGGGAATACCTTCCTTGTCTTGTATATCTTCGACTTGACAGTTCGGAACTATATTCTGA 113766 Query 94951 GTGGTCGACGTCAATCG-TGA-TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| | ||| |||| || ||||||||||| || || || |||||||| Sbjct 113767 GGGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 113825 Score = 105 bits (116), Expect = 6e-18 Identities = 173/240 (72%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC-GTTATAAT 94835 || ||| || |||| || || |||||||| | |||||| |||||| | ||| || | Sbjct 113823 CATTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGT 113882 Query 94836 CGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCC--GC--CAAAGATTAATCTTTGCT 94889 | | | || || || ||| |||| |||||| || || |||| || || | ||||| Sbjct 113883 C--TGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCT 113939 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | ||||| ||||||||||| ||||| | || || | |||||| || | | |||||| | Sbjct 113940 GGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTG 113999 Query 94950 CGTGGTCGACGTCAATCG-TGA-TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| | ||| |||| || ||||||||||| || || || |||||||| Sbjct 114000 AGGGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC--GTTATAA 94834 || ||| || |||| || || |||||||| | |||||| |||||||| | ||| || Sbjct 114287 CATTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAG 114346 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || | || || || || ||||| |||||| || |||| || || | ||| || | Sbjct 114347 TCTCG---AGAGTACGACCATGCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGT 114402 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC-CGACAGTGTCAGCG 94951 |||| ||||||||||| ||||| | || || | ||| | | | | |||||| | | Sbjct 114403 CTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTAAAGTTTTTCAATAGTGTCTGAG 114462 Query 94952 TGGTCGACGTCAATCGTGA-TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || | |||| || ||||||||||| ||||| || || ||||| Sbjct 114463 GGCTCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCAT 114519 >seq103 Length=203287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/252 (69%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || || | ||| ||||||||||| || ||||||||||| | ||||| || | Sbjct 14160 CCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGAC 14219 Query 94841 ATAGTGTTGGAATCCTCCAGCTG--TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| | || || || || ||| || |||| || | ||||| ||||| || | Sbjct 14220 AGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGG 14279 Query 94899 GAATACCTTCTTTGTCAT-AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 | ||||||||||| || | |||| |||| || || | | ||| || | | ||| Sbjct 14280 GTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCG 14339 Query 94958 ACGTCAATCGTGA-------TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || | ||| | |||| ||||| || | ||||||||||| || |||||| Sbjct 14340 ACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCATGAC 14399 Query 95011 TACAACATATTT 95022 || || |||||| Sbjct 14400 TAGAAAATATTT 14411 >seq36 Length=139094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 174/248 (70%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || ||||| ||||| |||||||| | ||||| |||||||| | ||||| || Sbjct 92192 CATTCCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTC 92250 Query 94837 GCTCATAGTGTTGGA--ATCCTCCA-GCTGTTTTCCGCCAAAGATTAAT-CTTTGCTGAT 94892 | | || || || ||| || | | || ||||| |||| || || | |||||| | Sbjct 92251 --TGAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGT 92308 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC-CGACAGTGTCAGCG 94951 |||||||||| ||||| ||||| | || || | |||||| | | | ||| || | Sbjct 92309 CTGGAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAA 92368 Query 94952 TGGTCGACGTCAATCG-TGATG---GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| | ||| | || || || ||||| || || ||||| |||||||| Sbjct 92369 GGCTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 Query 95008 GCTTACAA 95015 ||| ||| Sbjct 92429 TCTTTCAA 92436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290544374120