Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq57 113 7e-21 seq81 104 4e-18 >seq57 Length=104630 Score = 113 bits (124), Expect = 7e-21 Identities = 174/247 (70%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAA-GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||||||||||| || ||| || || || || || ||||| || ||| |||| | ||||| Sbjct 52775 CTTCGAGATAATATTCAAAGGTATTACGAAACCTGCTATTCGACGTTTGGCAAGACGTGG 52834 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| | ||||| | ||||||| |||| | | || |||| | || Sbjct 52835 TGGTGTAAAGCGTATATCTGGCCTTATCTATGAGGAGACAAGGAACGTGTTGAGAGTGTT 52894 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || | | ||||| | ||| || | || || ||||||||| | |||||||| Sbjct 52895 TCTGGAAAGTGTTATTCGTGACGCAGTAACTTACACGGAGCACGCTCGTAGAAAGACTGT 52954 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | || ||||| |||||||| || || |||| | | || |||||||| Sbjct 52955 CACTGCAATGGACGTGGTTTATGCTTTGAAACGCCAGGGTCGTACGTTGTACGGTTTTGG 53014 Query 16693 AAGTTAA 16699 ||||| Sbjct 53015 TGGTTAA 53021 >seq81 Length=117899 Score = 104 bits (114), Expect = 4e-18 Identities = 196/280 (70%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 16433 GCTAAGCGTCA-TCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 || |||||||| ||||| | |||| ||||| || ||||||||||| ||||| ||||||| Sbjct 81109 GCAAAGCGTCACTCGCAAAG-TCTTGCGAGACAATATCCAAGGAATAACCAAACCAGCTA 81051 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCA-----AGCGTGTCTCTGGATTGGTCTATGA 16545 |||||||| |||| | | |||||||| | | | |||| ||| | ||||||| Sbjct 81050 TCCGTCGTTTGGCGAGAAGAGGTGGAGTGAAATTCAAAGAATCTCAGGACTTATCTATGA 80991 Query 16546 AGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATG-ATGC-TTTCCAC 16603 ||| | || |||| | | ||| | | | ||||| | || |||| || | Sbjct 80990 AGAAACACGAAATGTCCTTCGTGTTTTCTTGGAAAGTGTTATTCGTGTATGCAGTTACCT 80931 Query 16604 TATACCGAGCAC--GCTAAACGTAAGACTGTCACCTCCATGG--ATATCGTCTATGCATT 16659 ||||| |||| | ||| || ||||| || || | |||| | |||| ||||| | Sbjct 80930 TATACGGAGCCCGGGCTCGTCGCAAGACGGTAACTGCTATGGGACTGTCGTATATGCTCT 80871 Query 16660 GAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||||||||||||||| |||| || |||||| | ||| Sbjct 80870 GAAACGTCAAGGCCGTACCCTTTACGGATTTGGAGGATAA 80831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075093026081