Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq17 435 4e-117 >seq17 Length=139726 Score = 435 bits (482), Expect = 4e-117 Identities = 740/1049 (71%), Gaps = 25/1049 (2%) Strand=Plus/Plus Query 137846 AATTAAACAGAGAGGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGT 137905 || || ||| ||||| | |||||| | | ||||| ||| | ||||| ||||||||||| Sbjct 27212 AAATATACAAAGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGT 27271 Query 137906 ATTTG-TGGGTTGGTCTGGACT--ACTACTTTTTCCCACTGCTTATT--TGGCCCTTGGT 137960 |||| | || ||||| || | | ||||||| | | || | | ||||| || Sbjct 27272 ATTTAATTGGATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCCCTAGGC 27331 Query 137961 GGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGT 138020 | ||| |||| || ||||| |||||||| ||||| || || || || || ||| | Sbjct 27332 GCTTGGTTTACAGGTACAAC-TTTGTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCT 27390 Query 138021 TATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGT 138080 ||| | ||||| |||||| | || || || || || | ||||| || |||||| Sbjct 27391 TATTTAGAAGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGA 27449 Query 138081 CATTCTCTTCTTCTACTTT--GGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCC 138138 || ||| | | ||| ||| |||| || || ||||||| ||| | | |||| | Sbjct 27450 CA--CTCAT-TACTATTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTC 27506 Query 138139 AACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCA 138198 || |||| || | ||||| ||| || | || || || ||| | | | | | || Sbjct 27507 AAATTGGAGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT- 27565 Query 138199 TGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCA 138257 || || || || ||||| || | | | ||||| || | || || || ||||| || Sbjct 27566 TGTTTACGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCT 27625 Query 138258 TTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCC 138317 || || || || || || || || || || || || || ||||| | || ||| | Sbjct 27626 TTTTCGGGACCAATTGCAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCT 27684 Query 138318 AGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTT 138377 |||||||| ||||||| ||||| || ||||| ||||| |||| | || || | Sbjct 27685 AGTTGGTT--TTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TG 27741 Query 138378 CAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTT 138437 || || |||||||||||||| | || || || ||||||||||| || || || || ||| Sbjct 27742 CAAGGCTTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTT 27801 Query 138438 GGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGAT 138497 ||||| || | | || ||||||||||| || || ||||||||||| || | ||||||| Sbjct 27802 GGTGGAGCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGAT 27861 Query 138498 GGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCA 138557 |||||| | |||||||| | ||| ||| ||| || ||| ||||||||| |||||| Sbjct 27862 GGCGAAGCTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCA 27921 Query 138558 ATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGT 138617 |||||||| ||||| |||| ||||| ||||| ||||| |||||||| |||||| | Sbjct 27922 ATGGTTACAGCTAATCGTT-TTGGTCACAAAT-TTTGGTGTTGCTTTT-CTAATAAAAGA 27978 Query 138618 TGGCTTCACTTCTTT--ATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTG 138675 ||||| || |||||| ||||| ||||| || || | || | ||||| ||| ||||| Sbjct 27979 TGGCTACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTG 28038 Query 138676 GTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTG 138735 ||||||| || ||||| | || |||| || ||||||||||| || |||||| | |||| Sbjct 28039 GTATTATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTG 28098 Query 138736 CAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTC 138795 | ||||| ||||| ||||| || ||||| || || || || | || || ||||||||| Sbjct 28099 CCGCAGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTA 28158 Query 138796 TGCGTGCCTGGATGGCTCCTGTGGA-TCAACCTCACGAAAACTTTGTTTTTCCTGAAGAA 138854 | | || |||||||| | || |||||| || ||||| ||||| || || || || Sbjct 28159 TAAGAGCATGGATGGCAACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAG 28217 Query 138855 GTATTGCCAAGAGGCAACGCTCTGTGATA 138883 || || ||| | || || || || | ||| Sbjct 28218 GTTTTACCACGTGGAAATGCCCTTTAATA 28246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967081596800