Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq17 450 2e-121 >seq17 Length=139726 Score = 450 bits (498), Expect = 2e-121 Identities = 737/1040 (71%), Gaps = 48/1040 (5%) Strand=Plus/Plus Query 171805 TTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCA-TCGGATGGTCTGGTCTT--TTAC 171861 ||||||||||| |||| | ||||| || ||||| | | |||||||| ||| | |||| Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 171862 TTTTACCTTGTGCTTA---CCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGA 171918 |||| |||||| | || |||||| | || | |||||| ||| || ||||| || | Sbjct 27301 TTTT-CCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTA 27358 Query 171919 CCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTG 171978 | || ||||| || |||||| | || || || ||| | || ||| || |||||||||| Sbjct 27359 CTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAA-TTTTTAACTG 27417 Query 171979 CAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTG 172038 | |||||||||| |||| || |||||| || || | || |||||||||| | Sbjct 27418 CTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACCAG 27476 Query 172039 AGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCAT 172098 | || ||||| ||| || |||||| |||| | || || |||||| ||| ||| | Sbjct 27477 AAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTT 27536 Query 172099 TACATGGAGTCTTTGGACTCA-TAGGTTTCATGCTTA-GACAGTTTGAGATTGCAGGACT 172156 ||||||| | |||||| | | ||||||| || ||| | || ||||| || ||| || | Sbjct 27537 TACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAAGATT 27594 Query 172157 TGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAG 172216 || || || | || || || ||| |||| || || | | |||||||| || Sbjct 27595 AGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTT-- 27652 Query 172217 CA-TCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTG 172275 || | ||||| || |||||| | || || ||||||||| | || ||| ||||| | Sbjct 27653 CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAG 27710 Query 172276 TCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATC 172335 | ||||| |||||| | | ||||||||| | || || ||||| || ||| | |||| Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 172336 CATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATG 172395 |||| |||||||||||||| || || |||||||||||||||||| | || || || |||| Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 172396 GTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTC 172455 | ||||| ||| | || || || | ||||| || | |||| | Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAG----ATGGC--------GAAGCT------- 27870 Query 172456 AATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTA 172515 ||| ||||||||||| || || ||||| ||||||||||||| ||| ||| Sbjct 27871 --GCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTA 27928 Query 172516 CTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTAC 172575 | ||||| | || |||||||| || |||||| | || ||||| || ||||||| ||| Sbjct 27929 CAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTAC 27985 Query 172576 ACTTCCTT--ATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 | ||| || ||| | || || || || | || | |||||| ||||| ||||| | Sbjct 27986 ATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTAT 28045 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 ||| |||||| | || | | ||||| || || || |||||||| || | || ||||| Sbjct 28046 AGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGA 28105 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 || ||||| ||||||||||| || ||||| || | || || ||||||||||| ||||| Sbjct 28106 GGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGC 28165 Query 172754 ATGGATGTCATCTGTCGA-TCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 172812 ||||||| || | || |||||| ||||| || ||||| |||||||| || || || | Sbjct 28166 ATGGATGGCAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTAC 28224 Query 172813 CACGAGGCAACGCACTATAA 172832 |||| || || || || ||| Sbjct 28225 CACGTGGAAATGCCCTTTAA 28244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267965981880