Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq72 165 9e-36 seq66 156 4e-33 seq82 152 5e-32 seq89 93.3 4e-14 >seq72 Length=85273 Score = 165 bits (182), Expect = 9e-36 Identities = 356/532 (67%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAAT-CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||| |||||||||||||| | ||||||||||| |||||||| || | || || ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| || || ||||| | ||||||||||| ||||||||||| || ||| | || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 || || || || || || || |||||||| || || | |||||| | | | || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAG---CA 75794 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 | | |||||||| |||||||| || || | | |||||| |||| || Sbjct 75795 GAAGACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 21707 ATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 || |||| || | | || ||||| | |||| |||| Sbjct 75855 ATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 75914 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 | |||| |||| ||||| |||||||| || |||||||||||||| || ||||||| ||| Sbjct 75915 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 75974 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | |||||| || | ||||| || || | || || || || ||||| Sbjct 75975 TTCAGGAATTTGAACATCCCGA-CAAATCTTTCTGCAAGATTCTCCAAAACGATACCATC 76033 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 || ||||| |||||||||| || ||||| | ||||| | | || || || Sbjct 76034 TGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTT 76093 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATC-TACTTCTTCAGTTGTCCAAAA 21996 |||||||||| ||||| ||| || || | |||||||| |||||||| Sbjct 76094 TTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAA 76145 >seq66 Length=178311 Score = 156 bits (172), Expect = 4e-33 Identities = 360/537 (67%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTA--ATT--CATTAGAAA 21527 ||||||||||||||| ||||||||||| |||||||| | | || | || |||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT-GACGCAAATGCTCCT 21586 |||| || || ||||| | ||||||||||| ||||||||||| || ||| | || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 21587 GAAAAGAAAATGCCCT-CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 || || || || |||| |||| |||||||| || || | |||||| | | | || | Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAG---C 8213 Query 21646 TTTATCCAATATCCATTTTTCTG--CCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 | | |||||||| || | ||||||| || || | | |||||| |||| Sbjct 8212 AGAAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 8153 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 || || |||| || | | || ||||| | |||| |||| Sbjct 8152 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 8093 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 | |||| |||| ||||| |||||||| || |||||||||||||| || ||||||| | Sbjct 8092 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 8033 Query 21824 GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 || || | | |||||| || | |||||| || || | || || || || ||| Sbjct 8032 GCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCA 7973 Query 21884 T-CACT--GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTT 21940 | | || || ||||| |||||||||| || ||||| | ||||| | | || Sbjct 7972 TACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTC 7913 Query 21941 AA-TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || ||||||||| ||| ||||| ||| || || | |||||||| |||||||| Sbjct 7912 AACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 >seq82 Length=95658 Score = 152 bits (168), Expect = 5e-32 Identities = 355/533 (67%), Gaps = 11/533 (2%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| |||||||||||| || ||||||||||| |||||||| || | || || |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG-CTCCT 21586 |||| || || ||||| | |||| |||| ||||||||||| || ||| | ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 21587 GAAAAGAAAATGCCCTC-AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 || || || || || || ||| ||||||||||| || | |||||| | | | || | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAG---C 94584 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 | | |||||||| |||||||| || || | | |||||| |||| || Sbjct 94583 AGAAGACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 94524 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 || |||| || | | || ||||| | |||| |||| Sbjct 94523 CATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 94464 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 | |||| |||| ||||| |||||||| || |||||||||||||| || ||||||| ||| Sbjct 94463 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 94404 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCA-AGTTTTCATTTACTATTCCAT 21884 || | | |||||| || | ||||| || || | | | | | || || |||| Sbjct 94403 TTCAGGAATTTGAACATCCCGA-CAAATCTTTCTGCAAGATTCTCCCAAAACGATACCAT 94345 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 | || ||||| |||||||||| || ||||| | ||||| | | || || | Sbjct 94344 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 94285 Query 21945 TTTTCCAATCTAATAAATC-TTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||||||||| ||||| ||| || || | |||||||| |||||||| Sbjct 94284 TTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 94232 >seq89 Length=114172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| ||||||||||| |||||||| | ||| || ||||| ||||| || | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| || || | || || ||||||||||| || |||| | || |||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGA-ACAAAAGAACCAGAAAAGAAT 97084 Query 21596 ATGCCCTCAACGGCAGCAAATGCAAC 21621 || || || || || ||||| ||||| Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAAC 97110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900022095080